Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02660 and AO356_02665 are separated by 263 nucleotides AO356_02665 and AO356_02670 are separated by 79 nucleotides AO356_02670 and AO356_02675 are separated by 13 nucleotides
AO356_02660: AO356_02660 - invasion protein regulator, at 584,223 to 585,482
_02660
AO356_02665: AO356_02665 - hypothetical protein, at 585,746 to 586,003
_02665
AO356_02670: AO356_02670 - hypothetical protein, at 586,083 to 587,189
_02670
AO356_02675: AO356_02675 - cell invasion protein, at 587,203 to 588,300
_02675
Position (kb) 586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 585.151 kb on - strand, within AO356_02660 at 585.212 kb on - strand, within AO356_02660 at 585.247 kb on + strand, within AO356_02660 at 585.248 kb on - strand, within AO356_02660 at 585.248 kb on - strand, within AO356_02660 at 585.248 kb on - strand, within AO356_02660 at 585.251 kb on + strand, within AO356_02660 at 585.252 kb on - strand, within AO356_02660 at 585.252 kb on - strand, within AO356_02660 at 585.252 kb on - strand, within AO356_02660 at 585.357 kb on + strand at 585.358 kb on - strand at 585.482 kb on + strand at 585.482 kb on + strand at 585.483 kb on - strand at 585.498 kb on + strand at 585.568 kb on + strand at 585.569 kb on - strand at 585.608 kb on + strand at 585.666 kb on + strand at 585.673 kb on + strand at 585.715 kb on - strand at 585.736 kb on + strand at 585.737 kb on - strand at 585.754 kb on + strand at 585.761 kb on + strand at 585.762 kb on - strand at 585.762 kb on - strand at 585.763 kb on + strand at 585.763 kb on + strand at 585.764 kb on - strand at 585.764 kb on - strand at 585.764 kb on - strand at 585.764 kb on - strand at 585.785 kb on + strand, within AO356_02665 at 585.785 kb on + strand, within AO356_02665 at 585.786 kb on - strand, within AO356_02665 at 585.847 kb on + strand, within AO356_02665 at 585.848 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.851 kb on - strand, within AO356_02665 at 585.947 kb on - strand, within AO356_02665 at 585.980 kb on - strand at 586.063 kb on - strand at 586.084 kb on + strand at 586.109 kb on + strand at 586.145 kb on + strand at 586.162 kb on + strand at 586.276 kb on - strand, within AO356_02670 at 586.276 kb on - strand, within AO356_02670 at 586.289 kb on - strand, within AO356_02670 at 586.486 kb on + strand, within AO356_02670 at 586.534 kb on - strand, within AO356_02670 at 586.624 kb on + strand, within AO356_02670 at 586.646 kb on - strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 587.154 kb on + strand at 587.154 kb on + strand at 587.155 kb on - strand at 587.159 kb on + strand at 587.171 kb on + strand at 587.171 kb on + strand at 587.172 kb on - strand at 587.172 kb on - strand at 587.189 kb on + strand at 587.189 kb on + strand at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.637 kb on - strand, within AO356_02675 at 587.716 kb on - strand, within AO356_02675
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 585,151 - AO356_02660 0.74 +0.4 585,212 - AO356_02660 0.78 -0.1 585,247 + AO356_02660 0.81 +0.4 585,248 - AO356_02660 0.81 -0.1 585,248 - AO356_02660 0.81 +0.7 585,248 - AO356_02660 0.81 -0.8 585,251 + AO356_02660 0.82 +2.1 585,252 - AO356_02660 0.82 +0.3 585,252 - AO356_02660 0.82 +0.2 585,252 - AO356_02660 0.82 +0.2 585,357 + -0.5 585,358 - +0.2 585,482 + -0.3 585,482 + -0.5 585,483 - -0.6 585,498 + -0.7 585,568 + +0.0 585,569 - -0.3 585,608 + +0.0 585,666 + -0.2 585,673 + -0.3 585,715 - +2.9 585,736 + +1.1 585,737 - +0.3 585,754 + +1.1 585,761 + -0.1 585,762 - +0.8 585,762 - +0.5 585,763 + -1.4 585,763 + -0.6 585,764 - -1.2 585,764 - +0.7 585,764 - +0.5 585,764 - -0.7 585,785 + AO356_02665 0.15 -2.9 585,785 + AO356_02665 0.15 -1.1 585,786 - AO356_02665 0.16 -0.2 585,847 + AO356_02665 0.39 -2.1 585,848 - AO356_02665 0.40 +0.4 585,851 - AO356_02665 0.41 +0.4 585,851 - AO356_02665 0.41 +0.6 585,851 - AO356_02665 0.41 +0.7 585,851 - AO356_02665 0.41 +0.6 585,947 - AO356_02665 0.78 -0.2 585,980 - +0.3 586,063 - +1.1 586,084 + +0.1 586,109 + +1.1 586,145 + -1.3 586,162 + -0.6 586,276 - AO356_02670 0.17 +0.4 586,276 - AO356_02670 0.17 -0.1 586,289 - AO356_02670 0.19 +0.3 586,486 + AO356_02670 0.36 +0.7 586,534 - AO356_02670 0.41 +0.6 586,624 + AO356_02670 0.49 +0.3 586,646 - AO356_02670 0.51 -1.4 586,719 + AO356_02670 0.57 -0.5 586,719 + AO356_02670 0.57 -0.4 587,154 + -0.7 587,154 + -0.4 587,155 - +0.6 587,159 + -0.1 587,171 + +0.7 587,171 + +1.1 587,172 - -0.4 587,172 - +0.4 587,189 + -0.0 587,189 + +1.0 587,636 + AO356_02675 0.39 -0.4 587,636 + AO356_02675 0.39 -1.6 587,636 + AO356_02675 0.39 -0.6 587,637 - AO356_02675 0.40 -1.0 587,716 - AO356_02675 0.47 -0.1
Or see this region's nucleotide sequence