Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02655

Experiment: Cisplatin 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02650 and AO356_02655 are separated by 128 nucleotidesAO356_02655 and AO356_02660 overlap by 4 nucleotides AO356_02650: AO356_02650 - type III secretion system protein PrgH, at 582,455 to 583,633 _02650 AO356_02655: AO356_02655 - invasion protein IagB, at 583,762 to 584,226 _02655 AO356_02660: AO356_02660 - invasion protein regulator, at 584,223 to 585,482 _02660 Position (kb) 583 584 585Strain fitness (log2 ratio) -2 -1 0 1at 582.786 kb on + strand, within AO356_02650at 583.053 kb on + strand, within AO356_02650at 583.053 kb on + strand, within AO356_02650at 583.053 kb on + strand, within AO356_02650at 583.053 kb on + strand, within AO356_02650at 583.053 kb on + strand, within AO356_02650at 583.054 kb on - strand, within AO356_02650at 583.054 kb on - strand, within AO356_02650at 583.054 kb on - strand, within AO356_02650at 583.054 kb on - strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.671 kb on + strandat 583.671 kb on + strandat 583.672 kb on - strandat 583.672 kb on - strandat 583.859 kb on + strand, within AO356_02655at 583.859 kb on + strand, within AO356_02655at 583.881 kb on + strand, within AO356_02655at 583.881 kb on + strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.883 kb on + strand, within AO356_02655at 583.883 kb on + strand, within AO356_02655at 583.884 kb on - strand, within AO356_02655at 584.384 kb on - strand, within AO356_02660at 584.466 kb on - strand, within AO356_02660at 584.722 kb on + strand, within AO356_02660at 584.740 kb on + strand, within AO356_02660at 584.778 kb on + strand, within AO356_02660at 584.779 kb on - strand, within AO356_02660at 584.807 kb on + strand, within AO356_02660at 584.808 kb on - strand, within AO356_02660at 585.151 kb on - strand, within AO356_02660at 585.212 kb on - strand, within AO356_02660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
remove
582,786 + AO356_02650 0.28 +1.1
583,053 + AO356_02650 0.51 -0.3
583,053 + AO356_02650 0.51 -0.5
583,053 + AO356_02650 0.51 -0.7
583,053 + AO356_02650 0.51 -0.1
583,053 + AO356_02650 0.51 -0.1
583,054 - AO356_02650 0.51 -1.2
583,054 - AO356_02650 0.51 +1.0
583,054 - AO356_02650 0.51 -1.0
583,054 - AO356_02650 0.51 +0.7
583,317 + AO356_02650 0.73 -0.6
583,317 + AO356_02650 0.73 +0.9
583,317 + AO356_02650 0.73 -0.8
583,317 + AO356_02650 0.73 +0.5
583,317 + AO356_02650 0.73 +0.8
583,318 - AO356_02650 0.73 +0.5
583,318 - AO356_02650 0.73 +0.4
583,318 - AO356_02650 0.73 -0.2
583,318 - AO356_02650 0.73 -0.2
583,318 - AO356_02650 0.73 -1.1
583,318 - AO356_02650 0.73 +0.9
583,671 + -0.5
583,671 + -1.3
583,672 - -0.4
583,672 - -1.1
583,859 + AO356_02655 0.21 +0.0
583,859 + AO356_02655 0.21 +0.4
583,881 + AO356_02655 0.26 -0.2
583,881 + AO356_02655 0.26 +0.3
583,882 - AO356_02655 0.26 +0.9
583,882 - AO356_02655 0.26 +0.3
583,882 - AO356_02655 0.26 -0.1
583,882 - AO356_02655 0.26 +0.7
583,883 + AO356_02655 0.26 +0.9
583,883 + AO356_02655 0.26 +0.1
583,884 - AO356_02655 0.26 +0.2
584,384 - AO356_02660 0.13 +1.4
584,466 - AO356_02660 0.19 -0.1
584,722 + AO356_02660 0.40 -2.7
584,740 + AO356_02660 0.41 +1.0
584,778 + AO356_02660 0.44 +0.1
584,779 - AO356_02660 0.44 -0.0
584,807 + AO356_02660 0.46 -0.3
584,808 - AO356_02660 0.46 +0.4
585,151 - AO356_02660 0.74 +0.4
585,212 - AO356_02660 0.78 -0.1

Or see this region's nucleotide sequence