Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00650 and AO356_00655 are separated by 35 nucleotides AO356_00655 and AO356_00660 are separated by 348 nucleotides
AO356_00650: AO356_00650 - MFS transporter, at 138,862 to 140,043
_00650
AO356_00655: AO356_00655 - dioxygenase, at 140,079 to 141,527
_00655
AO356_00660: AO356_00660 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 141,876 to 142,727
_00660
Position (kb)
140
141
142 Strain fitness (log2 ratio)
-1
0
1
2 at 139.222 kb on + strand, within AO356_00650 at 139.717 kb on + strand, within AO356_00650 at 139.717 kb on + strand, within AO356_00650 at 139.718 kb on - strand, within AO356_00650 at 139.764 kb on + strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650 at 139.948 kb on + strand at 139.948 kb on + strand at 139.948 kb on + strand at 139.979 kb on + strand at 139.979 kb on + strand at 139.980 kb on - strand at 140.085 kb on - strand at 140.124 kb on + strand at 140.205 kb on + strand at 140.625 kb on + strand, within AO356_00655 at 140.646 kb on - strand, within AO356_00655 at 140.662 kb on - strand, within AO356_00655 at 140.757 kb on + strand, within AO356_00655 at 140.930 kb on + strand, within AO356_00655 at 140.930 kb on + strand, within AO356_00655 at 140.930 kb on + strand, within AO356_00655 at 140.930 kb on + strand, within AO356_00655 at 140.931 kb on - strand, within AO356_00655 at 140.931 kb on - strand, within AO356_00655 at 140.931 kb on - strand, within AO356_00655 at 140.964 kb on + strand, within AO356_00655 at 140.964 kb on + strand, within AO356_00655 at 140.965 kb on - strand, within AO356_00655 at 140.965 kb on - strand, within AO356_00655 at 140.994 kb on - strand, within AO356_00655 at 141.001 kb on - strand, within AO356_00655 at 141.024 kb on + strand, within AO356_00655 at 141.024 kb on + strand, within AO356_00655 at 141.028 kb on + strand, within AO356_00655 at 141.029 kb on - strand, within AO356_00655 at 141.123 kb on + strand, within AO356_00655 at 141.213 kb on + strand, within AO356_00655 at 141.213 kb on + strand, within AO356_00655 at 141.214 kb on - strand, within AO356_00655 at 141.376 kb on - strand, within AO356_00655 at 141.607 kb on + strand at 141.608 kb on - strand at 141.615 kb on + strand at 141.615 kb on + strand at 141.616 kb on - strand at 141.616 kb on - strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.752 kb on - strand at 141.752 kb on - strand at 141.834 kb on - strand at 141.876 kb on - strand at 141.915 kb on + strand at 141.915 kb on + strand at 142.122 kb on + strand, within AO356_00660 at 142.123 kb on - strand, within AO356_00660 at 142.179 kb on - strand, within AO356_00660 at 142.321 kb on - strand, within AO356_00660 at 142.321 kb on - strand, within AO356_00660 at 142.321 kb on - strand, within AO356_00660 at 142.342 kb on - strand, within AO356_00660
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 139,222 + AO356_00650 0.30 -1.3 139,717 + AO356_00650 0.72 +0.1 139,717 + AO356_00650 0.72 -0.1 139,718 - AO356_00650 0.72 -0.5 139,764 + AO356_00650 0.76 -0.0 139,765 - AO356_00650 0.76 +0.8 139,765 - AO356_00650 0.76 -1.4 139,765 - AO356_00650 0.76 -0.1 139,948 + -0.2 139,948 + -0.2 139,948 + +0.6 139,979 + +1.0 139,979 + -0.0 139,980 - +1.1 140,085 - -0.2 140,124 + -1.0 140,205 + -0.1 140,625 + AO356_00655 0.38 +0.5 140,646 - AO356_00655 0.39 -0.2 140,662 - AO356_00655 0.40 +0.3 140,757 + AO356_00655 0.47 +0.3 140,930 + AO356_00655 0.59 +0.3 140,930 + AO356_00655 0.59 -0.2 140,930 + AO356_00655 0.59 +0.7 140,930 + AO356_00655 0.59 +0.5 140,931 - AO356_00655 0.59 +0.3 140,931 - AO356_00655 0.59 +0.1 140,931 - AO356_00655 0.59 -0.5 140,964 + AO356_00655 0.61 +1.0 140,964 + AO356_00655 0.61 -0.7 140,965 - AO356_00655 0.61 +0.7 140,965 - AO356_00655 0.61 -1.0 140,994 - AO356_00655 0.63 +0.4 141,001 - AO356_00655 0.64 -0.4 141,024 + AO356_00655 0.65 -0.1 141,024 + AO356_00655 0.65 -1.4 141,028 + AO356_00655 0.65 -0.0 141,029 - AO356_00655 0.66 -0.3 141,123 + AO356_00655 0.72 +0.5 141,213 + AO356_00655 0.78 +1.8 141,213 + AO356_00655 0.78 +0.3 141,214 - AO356_00655 0.78 -0.0 141,376 - AO356_00655 0.90 -0.4 141,607 + -0.0 141,608 - +0.7 141,615 + -0.5 141,615 + +0.7 141,616 - +0.1 141,616 - -0.3 141,751 + -0.3 141,751 + -0.3 141,751 + -0.0 141,752 - -0.4 141,752 - +1.1 141,834 - +0.8 141,876 - -1.3 141,915 + +0.1 141,915 + -0.4 142,122 + AO356_00660 0.29 -0.9 142,123 - AO356_00660 0.29 +1.0 142,179 - AO356_00660 0.36 +0.4 142,321 - AO356_00660 0.52 +1.5 142,321 - AO356_00660 0.52 +0.8 142,321 - AO356_00660 0.52 +1.3 142,342 - AO356_00660 0.55 -0.4
Or see this region's nucleotide sequence