Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28980

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28970 and RR42_RS28975 are separated by 15 nucleotidesRR42_RS28975 and RR42_RS28980 are separated by 180 nucleotidesRR42_RS28980 and RR42_RS28985 are separated by 197 nucleotides RR42_RS28970: RR42_RS28970 - 3-oxoacyl-ACP reductase, at 1,856,769 to 1,857,527 _RS28970 RR42_RS28975: RR42_RS28975 - acid phosphatase, at 1,857,543 to 1,858,343 _RS28975 RR42_RS28980: RR42_RS28980 - fatty acid--CoA ligase, at 1,858,524 to 1,860,266 _RS28980 RR42_RS28985: RR42_RS28985 - short-chain dehydrogenase, at 1,860,464 to 1,861,228 _RS28985 Position (kb) 1858 1859 1860 1861Strain fitness (log2 ratio) -2 -1 0 1at 1857.544 kb on + strandat 1857.544 kb on + strandat 1857.544 kb on + strandat 1857.545 kb on - strandat 1857.757 kb on + strand, within RR42_RS28975at 1857.757 kb on + strand, within RR42_RS28975at 1857.758 kb on - strand, within RR42_RS28975at 1857.758 kb on - strand, within RR42_RS28975at 1857.842 kb on + strand, within RR42_RS28975at 1857.857 kb on - strandat 1857.940 kb on + strand, within RR42_RS28975at 1857.940 kb on + strand, within RR42_RS28975at 1857.941 kb on - strand, within RR42_RS28975at 1857.941 kb on - strand, within RR42_RS28975at 1857.967 kb on - strand, within RR42_RS28975at 1858.004 kb on - strand, within RR42_RS28975at 1858.260 kb on + strand, within RR42_RS28975at 1858.774 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.802 kb on - strand, within RR42_RS28980at 1858.802 kb on - strand, within RR42_RS28980at 1858.802 kb on - strand, within RR42_RS28980at 1858.829 kb on + strand, within RR42_RS28980at 1858.829 kb on + strand, within RR42_RS28980at 1858.829 kb on + strand, within RR42_RS28980at 1858.850 kb on + strand, within RR42_RS28980at 1858.850 kb on + strand, within RR42_RS28980at 1858.851 kb on - strand, within RR42_RS28980at 1858.851 kb on - strand, within RR42_RS28980at 1858.851 kb on - strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1859.080 kb on + strand, within RR42_RS28980at 1859.080 kb on + strand, within RR42_RS28980at 1859.080 kb on + strand, within RR42_RS28980at 1859.081 kb on - strand, within RR42_RS28980at 1859.081 kb on - strand, within RR42_RS28980at 1859.597 kb on + strand, within RR42_RS28980at 1859.600 kb on - strand, within RR42_RS28980at 1859.649 kb on + strand, within RR42_RS28980at 1859.746 kb on + strand, within RR42_RS28980at 1859.747 kb on - strand, within RR42_RS28980at 1859.849 kb on - strand, within RR42_RS28980at 1859.917 kb on + strand, within RR42_RS28980at 1860.037 kb on + strand, within RR42_RS28980at 1860.037 kb on + strand, within RR42_RS28980at 1860.038 kb on - strand, within RR42_RS28980at 1860.038 kb on - strand, within RR42_RS28980at 1860.058 kb on + strand, within RR42_RS28980at 1860.058 kb on + strand, within RR42_RS28980at 1860.059 kb on - strand, within RR42_RS28980at 1860.242 kb on + strandat 1860.514 kb on + strandat 1860.515 kb on - strandat 1860.607 kb on - strand, within RR42_RS28985at 1860.607 kb on - strand, within RR42_RS28985at 1860.713 kb on - strand, within RR42_RS28985at 1860.750 kb on + strand, within RR42_RS28985at 1860.750 kb on + strand, within RR42_RS28985at 1860.751 kb on - strand, within RR42_RS28985at 1860.751 kb on - strand, within RR42_RS28985at 1860.927 kb on + strand, within RR42_RS28985at 1860.928 kb on - strand, within RR42_RS28985at 1860.930 kb on + strand, within RR42_RS28985at 1860.931 kb on - strand, within RR42_RS28985at 1860.931 kb on - strand, within RR42_RS28985at 1860.931 kb on - strand, within RR42_RS28985at 1860.931 kb on - strand, within RR42_RS28985at 1860.959 kb on + strand, within RR42_RS28985at 1860.959 kb on + strand, within RR42_RS28985at 1861.024 kb on - strand, within RR42_RS28985at 1861.027 kb on + strand, within RR42_RS28985at 1861.028 kb on - strand, within RR42_RS28985at 1861.028 kb on - strand, within RR42_RS28985at 1861.028 kb on - strand, within RR42_RS28985at 1861.028 kb on - strand, within RR42_RS28985

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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1,857,544 + +0.8
1,857,544 + +1.4
1,857,544 + +0.1
1,857,545 - -0.4
1,857,757 + RR42_RS28975 0.27 +0.7
1,857,757 + RR42_RS28975 0.27 -0.7
1,857,758 - RR42_RS28975 0.27 +0.3
1,857,758 - RR42_RS28975 0.27 +0.3
1,857,842 + RR42_RS28975 0.37 -0.1
1,857,857 - +0.4
1,857,940 + RR42_RS28975 0.50 -0.3
1,857,940 + RR42_RS28975 0.50 -0.8
1,857,941 - RR42_RS28975 0.50 -0.3
1,857,941 - RR42_RS28975 0.50 -0.9
1,857,967 - RR42_RS28975 0.53 +0.3
1,858,004 - RR42_RS28975 0.58 -1.2
1,858,260 + RR42_RS28975 0.90 -0.8
1,858,774 + RR42_RS28980 0.14 +0.8
1,858,801 + RR42_RS28980 0.16 +0.9
1,858,801 + RR42_RS28980 0.16 +0.8
1,858,801 + RR42_RS28980 0.16 -0.1
1,858,801 + RR42_RS28980 0.16 -0.4
1,858,801 + RR42_RS28980 0.16 -0.2
1,858,802 - RR42_RS28980 0.16 -0.4
1,858,802 - RR42_RS28980 0.16 +0.8
1,858,802 - RR42_RS28980 0.16 -1.4
1,858,829 + RR42_RS28980 0.17 -0.2
1,858,829 + RR42_RS28980 0.17 -1.5
1,858,829 + RR42_RS28980 0.17 +0.6
1,858,850 + RR42_RS28980 0.19 -0.7
1,858,850 + RR42_RS28980 0.19 -0.2
1,858,851 - RR42_RS28980 0.19 +0.5
1,858,851 - RR42_RS28980 0.19 -0.2
1,858,851 - RR42_RS28980 0.19 -1.1
1,858,852 + RR42_RS28980 0.19 -0.2
1,858,852 + RR42_RS28980 0.19 +0.1
1,858,852 + RR42_RS28980 0.19 -1.6
1,858,852 + RR42_RS28980 0.19 -0.1
1,858,852 + RR42_RS28980 0.19 -0.2
1,858,852 + RR42_RS28980 0.19 -0.3
1,858,852 + RR42_RS28980 0.19 -0.3
1,858,853 - RR42_RS28980 0.19 +0.2
1,858,853 - RR42_RS28980 0.19 -0.3
1,858,853 - RR42_RS28980 0.19 -0.2
1,858,853 - RR42_RS28980 0.19 -1.0
1,859,080 + RR42_RS28980 0.32 -0.3
1,859,080 + RR42_RS28980 0.32 +1.1
1,859,080 + RR42_RS28980 0.32 -1.6
1,859,081 - RR42_RS28980 0.32 -0.8
1,859,081 - RR42_RS28980 0.32 +0.3
1,859,597 + RR42_RS28980 0.62 -2.2
1,859,600 - RR42_RS28980 0.62 +0.6
1,859,649 + RR42_RS28980 0.65 +0.4
1,859,746 + RR42_RS28980 0.70 +0.8
1,859,747 - RR42_RS28980 0.70 +0.2
1,859,849 - RR42_RS28980 0.76 -0.0
1,859,917 + RR42_RS28980 0.80 -0.8
1,860,037 + RR42_RS28980 0.87 +0.8
1,860,037 + RR42_RS28980 0.87 -0.2
1,860,038 - RR42_RS28980 0.87 -0.2
1,860,038 - RR42_RS28980 0.87 -1.6
1,860,058 + RR42_RS28980 0.88 -0.0
1,860,058 + RR42_RS28980 0.88 +1.1
1,860,059 - RR42_RS28980 0.88 -0.1
1,860,242 + -0.6
1,860,514 + +1.4
1,860,515 - +0.5
1,860,607 - RR42_RS28985 0.19 +0.8
1,860,607 - RR42_RS28985 0.19 -0.1
1,860,713 - RR42_RS28985 0.33 +0.8
1,860,750 + RR42_RS28985 0.37 +1.3
1,860,750 + RR42_RS28985 0.37 +0.2
1,860,751 - RR42_RS28985 0.38 -0.3
1,860,751 - RR42_RS28985 0.38 +1.0
1,860,927 + RR42_RS28985 0.61 +1.6
1,860,928 - RR42_RS28985 0.61 +0.2
1,860,930 + RR42_RS28985 0.61 -0.6
1,860,931 - RR42_RS28985 0.61 -0.1
1,860,931 - RR42_RS28985 0.61 +1.4
1,860,931 - RR42_RS28985 0.61 -0.1
1,860,931 - RR42_RS28985 0.61 -0.4
1,860,959 + RR42_RS28985 0.65 -0.6
1,860,959 + RR42_RS28985 0.65 -0.2
1,861,024 - RR42_RS28985 0.73 -0.0
1,861,027 + RR42_RS28985 0.74 +0.3
1,861,028 - RR42_RS28985 0.74 +1.2
1,861,028 - RR42_RS28985 0.74 +1.4
1,861,028 - RR42_RS28985 0.74 -1.1
1,861,028 - RR42_RS28985 0.74 -0.7

Or see this region's nucleotide sequence