Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28295

Experiment: L-Threonine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS28290 and RR42_RS28295 are separated by 88 nucleotidesRR42_RS28295 and RR42_RS28300 overlap by 4 nucleotides RR42_RS28290: RR42_RS28290 - DNA-binding protein, at 1,707,565 to 1,708,161 _RS28290 RR42_RS28295: RR42_RS28295 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data), at 1,708,250 to 1,709,452 _RS28295 RR42_RS28300: RR42_RS28300 - L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data), at 1,709,449 to 1,710,423 _RS28300 Position (kb) 1708 1709 1710Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1707.353 kb on + strandat 1707.354 kb on - strandat 1707.360 kb on - strandat 1707.360 kb on - strandat 1707.374 kb on - strandat 1707.479 kb on - strandat 1707.575 kb on + strandat 1707.794 kb on + strand, within RR42_RS28290at 1707.794 kb on + strand, within RR42_RS28290at 1707.794 kb on + strand, within RR42_RS28290at 1707.795 kb on - strand, within RR42_RS28290at 1708.040 kb on - strand, within RR42_RS28290at 1708.271 kb on + strandat 1708.272 kb on - strandat 1708.272 kb on - strandat 1708.360 kb on + strandat 1708.360 kb on + strandat 1708.409 kb on + strand, within RR42_RS28295at 1708.409 kb on + strand, within RR42_RS28295at 1708.410 kb on - strand, within RR42_RS28295at 1708.498 kb on + strand, within RR42_RS28295at 1708.499 kb on - strand, within RR42_RS28295at 1708.499 kb on - strand, within RR42_RS28295at 1708.508 kb on - strand, within RR42_RS28295at 1708.693 kb on + strand, within RR42_RS28295at 1708.693 kb on + strand, within RR42_RS28295at 1709.014 kb on + strand, within RR42_RS28295at 1709.140 kb on + strand, within RR42_RS28295at 1709.177 kb on + strand, within RR42_RS28295at 1709.252 kb on + strand, within RR42_RS28295at 1709.306 kb on + strand, within RR42_RS28295at 1709.306 kb on + strand, within RR42_RS28295at 1709.306 kb on + strand, within RR42_RS28295at 1709.307 kb on - strand, within RR42_RS28295at 1709.307 kb on - strand, within RR42_RS28295at 1709.307 kb on - strand, within RR42_RS28295at 1709.324 kb on + strand, within RR42_RS28295at 1709.469 kb on - strandat 1709.530 kb on + strandat 1709.665 kb on + strand, within RR42_RS28300at 1709.666 kb on - strand, within RR42_RS28300at 1709.786 kb on + strand, within RR42_RS28300at 1709.787 kb on - strand, within RR42_RS28300at 1709.787 kb on - strand, within RR42_RS28300at 1709.787 kb on - strand, within RR42_RS28300at 1709.787 kb on - strand, within RR42_RS28300at 1710.049 kb on + strand, within RR42_RS28300at 1710.049 kb on + strand, within RR42_RS28300at 1710.050 kb on - strand, within RR42_RS28300at 1710.050 kb on - strand, within RR42_RS28300at 1710.050 kb on - strand, within RR42_RS28300at 1710.091 kb on + strand, within RR42_RS28300at 1710.091 kb on + strand, within RR42_RS28300at 1710.091 kb on + strand, within RR42_RS28300at 1710.091 kb on + strand, within RR42_RS28300at 1710.092 kb on - strand, within RR42_RS28300at 1710.092 kb on - strand, within RR42_RS28300at 1710.167 kb on - strand, within RR42_RS28300at 1710.248 kb on - strand, within RR42_RS28300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
remove
1,707,353 + -0.9
1,707,354 - -0.9
1,707,360 - +0.8
1,707,360 - +0.3
1,707,374 - -1.4
1,707,479 - +0.1
1,707,575 + +0.2
1,707,794 + RR42_RS28290 0.38 +1.0
1,707,794 + RR42_RS28290 0.38 -0.8
1,707,794 + RR42_RS28290 0.38 +0.6
1,707,795 - RR42_RS28290 0.39 +0.4
1,708,040 - RR42_RS28290 0.80 -0.9
1,708,271 + -2.1
1,708,272 - -1.5
1,708,272 - +0.1
1,708,360 + -0.7
1,708,360 + -1.0
1,708,409 + RR42_RS28295 0.13 -4.3
1,708,409 + RR42_RS28295 0.13 -2.1
1,708,410 - RR42_RS28295 0.13 -1.4
1,708,498 + RR42_RS28295 0.21 -2.0
1,708,499 - RR42_RS28295 0.21 -1.2
1,708,499 - RR42_RS28295 0.21 -0.9
1,708,508 - RR42_RS28295 0.21 -3.0
1,708,693 + RR42_RS28295 0.37 -2.1
1,708,693 + RR42_RS28295 0.37 -2.0
1,709,014 + RR42_RS28295 0.64 -2.2
1,709,140 + RR42_RS28295 0.74 -1.9
1,709,177 + RR42_RS28295 0.77 -2.1
1,709,252 + RR42_RS28295 0.83 -1.1
1,709,306 + RR42_RS28295 0.88 -1.1
1,709,306 + RR42_RS28295 0.88 -2.1
1,709,306 + RR42_RS28295 0.88 -3.2
1,709,307 - RR42_RS28295 0.88 -2.7
1,709,307 - RR42_RS28295 0.88 -2.2
1,709,307 - RR42_RS28295 0.88 -1.9
1,709,324 + RR42_RS28295 0.89 -2.2
1,709,469 - -0.8
1,709,530 + -2.9
1,709,665 + RR42_RS28300 0.22 -2.7
1,709,666 - RR42_RS28300 0.22 -2.4
1,709,786 + RR42_RS28300 0.35 -3.2
1,709,787 - RR42_RS28300 0.35 -2.5
1,709,787 - RR42_RS28300 0.35 -2.7
1,709,787 - RR42_RS28300 0.35 -1.4
1,709,787 - RR42_RS28300 0.35 -0.9
1,710,049 + RR42_RS28300 0.62 -3.5
1,710,049 + RR42_RS28300 0.62 -3.2
1,710,050 - RR42_RS28300 0.62 -0.8
1,710,050 - RR42_RS28300 0.62 -1.2
1,710,050 - RR42_RS28300 0.62 -1.7
1,710,091 + RR42_RS28300 0.66 -3.9
1,710,091 + RR42_RS28300 0.66 -3.5
1,710,091 + RR42_RS28300 0.66 -1.5
1,710,091 + RR42_RS28300 0.66 -3.2
1,710,092 - RR42_RS28300 0.66 -2.4
1,710,092 - RR42_RS28300 0.66 -0.8
1,710,167 - RR42_RS28300 0.74 -0.1
1,710,248 - RR42_RS28300 0.82 -4.8

Or see this region's nucleotide sequence