Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24645 and RR42_RS24650 are separated by 245 nucleotides RR42_RS24650 and RR42_RS24655 are separated by 64 nucleotides RR42_RS24655 and RR42_RS24660 are separated by 214 nucleotides
RR42_RS24645: RR42_RS24645 - hypothetical protein, at 866,181 to 866,861
_RS24645
RR42_RS24650: RR42_RS24650 - membrane protein, at 867,107 to 867,796
_RS24650
RR42_RS24655: RR42_RS24655 - TetR family transcriptional regulator, at 867,861 to 868,562
_RS24655
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 866.968 kb on - strand at 866.968 kb on - strand at 866.986 kb on + strand at 867.037 kb on + strand at 867.170 kb on + strand at 867.170 kb on + strand at 867.170 kb on + strand at 867.244 kb on + strand, within RR42_RS24650 at 867.247 kb on + strand, within RR42_RS24650 at 867.284 kb on + strand, within RR42_RS24650 at 867.285 kb on - strand, within RR42_RS24650 at 867.331 kb on - strand, within RR42_RS24650 at 867.337 kb on + strand, within RR42_RS24650 at 867.337 kb on + strand, within RR42_RS24650 at 867.404 kb on + strand, within RR42_RS24650 at 867.404 kb on + strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.455 kb on - strand, within RR42_RS24650 at 867.473 kb on + strand, within RR42_RS24650 at 867.479 kb on + strand, within RR42_RS24650 at 867.479 kb on + strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.620 kb on + strand, within RR42_RS24650 at 867.625 kb on + strand, within RR42_RS24650 at 867.762 kb on - strand at 867.762 kb on - strand at 867.811 kb on + strand at 867.812 kb on - strand at 867.824 kb on - strand at 867.979 kb on - strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.039 kb on - strand, within RR42_RS24655 at 868.044 kb on + strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.131 kb on - strand, within RR42_RS24655 at 868.267 kb on - strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.286 kb on - strand, within RR42_RS24655 at 868.427 kb on + strand, within RR42_RS24655 at 868.428 kb on - strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.524 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.569 kb on + strand at 868.594 kb on - strand at 868.604 kb on + strand at 869.038 kb on + strand at 869.038 kb on + strand at 869.039 kb on - strand at 869.300 kb on + strand, within RR42_RS24660 at 869.300 kb on + strand, within RR42_RS24660 at 869.301 kb on - strand, within RR42_RS24660 at 869.364 kb on - strand, within RR42_RS24660 at 869.436 kb on + strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 866,968 - +0.2 866,968 - -0.3 866,986 + +0.1 867,037 + -0.4 867,170 + -0.2 867,170 + +0.5 867,170 + +0.2 867,244 + RR42_RS24650 0.20 +1.0 867,247 + RR42_RS24650 0.20 +0.2 867,284 + RR42_RS24650 0.26 +0.1 867,285 - RR42_RS24650 0.26 +0.3 867,331 - RR42_RS24650 0.32 -0.1 867,337 + RR42_RS24650 0.33 -0.7 867,337 + RR42_RS24650 0.33 -0.6 867,404 + RR42_RS24650 0.43 +0.8 867,404 + RR42_RS24650 0.43 +0.1 867,405 - RR42_RS24650 0.43 +0.6 867,405 - RR42_RS24650 0.43 +0.1 867,405 - RR42_RS24650 0.43 +0.1 867,405 - RR42_RS24650 0.43 -0.7 867,405 - RR42_RS24650 0.43 -0.1 867,405 - RR42_RS24650 0.43 +0.5 867,455 - RR42_RS24650 0.50 -0.0 867,473 + RR42_RS24650 0.53 -1.0 867,479 + RR42_RS24650 0.54 +0.2 867,479 + RR42_RS24650 0.54 -0.1 867,519 - RR42_RS24650 0.60 -0.5 867,519 - RR42_RS24650 0.60 -0.2 867,519 - RR42_RS24650 0.60 +0.3 867,620 + RR42_RS24650 0.74 -0.2 867,625 + RR42_RS24650 0.75 +0.7 867,762 - -0.7 867,762 - +0.1 867,811 + -0.2 867,812 - +0.8 867,824 - +1.6 867,979 - RR42_RS24655 0.17 +0.3 868,038 + RR42_RS24655 0.25 +0.8 868,038 + RR42_RS24655 0.25 -1.2 868,039 - RR42_RS24655 0.25 -0.2 868,044 + RR42_RS24655 0.26 +0.1 868,045 - RR42_RS24655 0.26 +0.2 868,045 - RR42_RS24655 0.26 -0.7 868,131 - RR42_RS24655 0.38 -0.4 868,267 - RR42_RS24655 0.58 -0.7 868,285 + RR42_RS24655 0.60 -0.2 868,285 + RR42_RS24655 0.60 +0.8 868,285 + RR42_RS24655 0.60 -3.3 868,286 - RR42_RS24655 0.61 +0.5 868,427 + RR42_RS24655 0.81 -0.2 868,428 - RR42_RS24655 0.81 -0.1 868,429 + RR42_RS24655 0.81 +0.3 868,429 + RR42_RS24655 0.81 -0.0 868,429 + RR42_RS24655 0.81 -0.2 868,429 + RR42_RS24655 0.81 -1.6 868,430 - RR42_RS24655 0.81 +0.5 868,430 - RR42_RS24655 0.81 -0.2 868,430 - RR42_RS24655 0.81 -0.8 868,524 + -1.0 868,525 + +2.2 868,525 + +0.0 868,525 + +0.2 868,525 + -0.2 868,526 - +0.0 868,526 - +0.7 868,526 - +0.8 868,526 - -0.0 868,548 - -0.2 868,548 - +1.0 868,548 - +0.1 868,569 + -0.6 868,594 - -0.2 868,604 + -0.7 869,038 + -1.7 869,038 + -0.7 869,039 - -0.8 869,300 + RR42_RS24660 0.17 +0.7 869,300 + RR42_RS24660 0.17 +0.1 869,301 - RR42_RS24660 0.17 +0.3 869,364 - RR42_RS24660 0.19 -1.5 869,436 + RR42_RS24660 0.21 +2.2 869,437 - RR42_RS24660 0.21 -0.1 869,437 - RR42_RS24660 0.21 +0.8 869,460 + RR42_RS24660 0.22 +0.6 869,460 + RR42_RS24660 0.22 +0.6
Or see this region's nucleotide sequence