Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24530

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24525 and RR42_RS24530 are separated by 106 nucleotidesRR42_RS24530 and RR42_RS24535 are separated by 106 nucleotidesRR42_RS24535 and RR42_RS24540 are separated by 5 nucleotides RR42_RS24525: RR42_RS24525 - hypothetical protein, at 834,490 to 835,209 _RS24525 RR42_RS24530: RR42_RS24530 - hypothetical protein, at 835,316 to 836,113 _RS24530 RR42_RS24535: RR42_RS24535 - tRNA-Asn, at 836,220 to 836,301 _RS24535 RR42_RS24540: RR42_RS24540 - tRNA-Gly, at 836,307 to 836,382 _RS24540 Position (kb) 835 836 837Strain fitness (log2 ratio) -2 -1 0 1 2at 834.574 kb on - strand, within RR42_RS24525at 834.590 kb on + strand, within RR42_RS24525at 834.590 kb on + strand, within RR42_RS24525at 834.590 kb on + strand, within RR42_RS24525at 834.590 kb on + strand, within RR42_RS24525at 834.590 kb on + strand, within RR42_RS24525at 834.627 kb on + strand, within RR42_RS24525at 834.714 kb on + strand, within RR42_RS24525at 834.803 kb on + strand, within RR42_RS24525at 834.803 kb on + strand, within RR42_RS24525at 834.803 kb on + strand, within RR42_RS24525at 834.804 kb on - strand, within RR42_RS24525at 834.804 kb on - strand, within RR42_RS24525at 834.899 kb on + strand, within RR42_RS24525at 834.899 kb on + strand, within RR42_RS24525at 834.899 kb on + strand, within RR42_RS24525at 834.900 kb on - strand, within RR42_RS24525at 834.900 kb on - strand, within RR42_RS24525at 834.909 kb on + strand, within RR42_RS24525at 834.960 kb on + strand, within RR42_RS24525at 834.960 kb on + strand, within RR42_RS24525at 834.961 kb on - strand, within RR42_RS24525at 834.980 kb on + strand, within RR42_RS24525at 835.234 kb on - strandat 835.292 kb on - strandat 835.305 kb on + strandat 835.305 kb on + strandat 835.306 kb on - strandat 835.327 kb on + strandat 835.327 kb on + strandat 835.327 kb on + strandat 835.327 kb on + strandat 835.328 kb on - strandat 835.328 kb on - strandat 835.328 kb on - strandat 835.434 kb on + strand, within RR42_RS24530at 835.434 kb on + strand, within RR42_RS24530at 835.460 kb on - strand, within RR42_RS24530at 835.460 kb on - strand, within RR42_RS24530at 835.463 kb on + strand, within RR42_RS24530at 835.463 kb on + strand, within RR42_RS24530at 835.463 kb on + strand, within RR42_RS24530at 835.463 kb on + strand, within RR42_RS24530at 835.464 kb on - strand, within RR42_RS24530at 835.552 kb on - strand, within RR42_RS24530at 835.552 kb on - strand, within RR42_RS24530at 835.552 kb on - strand, within RR42_RS24530at 835.552 kb on - strand, within RR42_RS24530at 835.552 kb on - strand, within RR42_RS24530at 835.755 kb on + strand, within RR42_RS24530at 835.756 kb on - strand, within RR42_RS24530at 835.756 kb on - strand, within RR42_RS24530at 835.756 kb on - strand, within RR42_RS24530at 835.936 kb on - strand, within RR42_RS24530at 835.936 kb on - strand, within RR42_RS24530at 835.936 kb on - strand, within RR42_RS24530at 835.936 kb on - strand, within RR42_RS24530at 835.975 kb on - strand, within RR42_RS24530at 835.975 kb on - strand, within RR42_RS24530at 835.975 kb on - strand, within RR42_RS24530at 836.203 kb on - strandat 836.207 kb on + strandat 836.261 kb on + strand, within RR42_RS24535at 836.268 kb on + strand, within RR42_RS24535at 836.305 kb on - strandat 836.315 kb on - strand, within RR42_RS24540at 836.475 kb on + strandat 836.476 kb on - strandat 836.497 kb on + strandat 836.497 kb on + strandat 836.497 kb on + strandat 836.497 kb on + strandat 836.497 kb on + strandat 836.498 kb on - strandat 836.568 kb on + strandat 836.569 kb on - strandat 836.569 kb on - strandat 836.620 kb on + strandat 836.620 kb on + strandat 836.673 kb on + strandat 836.730 kb on + strandat 836.732 kb on + strandat 836.733 kb on - strandat 836.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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834,574 - RR42_RS24525 0.12 +0.7
834,590 + RR42_RS24525 0.14 -0.6
834,590 + RR42_RS24525 0.14 -0.8
834,590 + RR42_RS24525 0.14 -0.4
834,590 + RR42_RS24525 0.14 +1.0
834,590 + RR42_RS24525 0.14 -0.5
834,627 + RR42_RS24525 0.19 -0.2
834,714 + RR42_RS24525 0.31 +0.8
834,803 + RR42_RS24525 0.43 +0.8
834,803 + RR42_RS24525 0.43 +0.3
834,803 + RR42_RS24525 0.43 -0.6
834,804 - RR42_RS24525 0.44 -0.2
834,804 - RR42_RS24525 0.44 -0.7
834,899 + RR42_RS24525 0.57 +0.2
834,899 + RR42_RS24525 0.57 -0.2
834,899 + RR42_RS24525 0.57 -1.0
834,900 - RR42_RS24525 0.57 +0.7
834,900 - RR42_RS24525 0.57 -0.2
834,909 + RR42_RS24525 0.58 +1.1
834,960 + RR42_RS24525 0.65 -0.3
834,960 + RR42_RS24525 0.65 +1.4
834,961 - RR42_RS24525 0.65 -0.6
834,980 + RR42_RS24525 0.68 -0.2
835,234 - +1.5
835,292 - -0.5
835,305 + -0.4
835,305 + +0.8
835,306 - +0.6
835,327 + -0.2
835,327 + +0.3
835,327 + +0.0
835,327 + +0.2
835,328 - +1.5
835,328 - -1.7
835,328 - +0.4
835,434 + RR42_RS24530 0.15 +0.5
835,434 + RR42_RS24530 0.15 +1.1
835,460 - RR42_RS24530 0.18 -0.9
835,460 - RR42_RS24530 0.18 +1.0
835,463 + RR42_RS24530 0.18 +0.6
835,463 + RR42_RS24530 0.18 +0.0
835,463 + RR42_RS24530 0.18 -0.4
835,463 + RR42_RS24530 0.18 +0.4
835,464 - RR42_RS24530 0.19 +1.7
835,552 - RR42_RS24530 0.30 +1.8
835,552 - RR42_RS24530 0.30 +0.6
835,552 - RR42_RS24530 0.30 +0.1
835,552 - RR42_RS24530 0.30 -0.5
835,552 - RR42_RS24530 0.30 -0.7
835,755 + RR42_RS24530 0.55 -0.7
835,756 - RR42_RS24530 0.55 +0.8
835,756 - RR42_RS24530 0.55 -0.2
835,756 - RR42_RS24530 0.55 -0.2
835,936 - RR42_RS24530 0.78 +0.8
835,936 - RR42_RS24530 0.78 +2.2
835,936 - RR42_RS24530 0.78 +0.5
835,936 - RR42_RS24530 0.78 +1.4
835,975 - RR42_RS24530 0.83 -0.7
835,975 - RR42_RS24530 0.83 +0.4
835,975 - RR42_RS24530 0.83 +0.2
836,203 - +1.1
836,207 + -0.4
836,261 + RR42_RS24535 0.50 +1.0
836,268 + RR42_RS24535 0.59 -0.5
836,305 - +0.1
836,315 - RR42_RS24540 0.11 -0.2
836,475 + -0.4
836,476 - -0.8
836,497 + +0.1
836,497 + -1.6
836,497 + -0.4
836,497 + +0.2
836,497 + -1.2
836,498 - +0.1
836,568 + +0.8
836,569 - +0.1
836,569 - -1.0
836,620 + -0.5
836,620 + +0.3
836,673 + +0.3
836,730 + +0.2
836,732 + +0.5
836,733 - -2.2
836,941 - +0.9

Or see this region's nucleotide sequence