Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22585 and RR42_RS22590 are separated by 185 nucleotides RR42_RS22590 and RR42_RS22595 are separated by 144 nucleotides RR42_RS22595 and RR42_RS22600 are separated by 133 nucleotides RR42_RS22600 and RR42_RS22605 are separated by 112 nucleotides RR42_RS22605 and RR42_RS22610 are separated by 2 nucleotides
RR42_RS22585: RR42_RS22585 - MarR family transcriptional regulator, at 402,286 to 402,783
_RS22585
RR42_RS22590: RR42_RS22590 - organic hydroperoxide resistance protein, at 402,969 to 403,394
_RS22590
RR42_RS22595: RR42_RS22595 - LysR family transcriptional regulator, at 403,539 to 404,465
_RS22595
RR42_RS22600: RR42_RS22600 - heavy metal resistance protein CzcE, at 404,599 to 404,964
_RS22600
RR42_RS22605: RR42_RS22605 - hypothetical protein, at 405,077 to 405,448
_RS22605
RR42_RS22610: RR42_RS22610 - toxin HipA, at 405,451 to 406,785
_RS22610
Position (kb) 403
404
405 Strain fitness (log2 ratio) -1
0
1
2 at 402.767 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.864 kb on - strand at 402.866 kb on - strand at 402.878 kb on - strand at 402.946 kb on - strand at 402.953 kb on - strand at 402.990 kb on + strand at 402.990 kb on + strand at 403.059 kb on - strand, within RR42_RS22590 at 403.368 kb on - strand at 403.392 kb on + strand at 403.393 kb on - strand at 403.444 kb on + strand at 403.445 kb on - strand at 403.445 kb on - strand at 403.546 kb on - strand at 403.645 kb on - strand, within RR42_RS22595 at 403.645 kb on - strand, within RR42_RS22595 at 403.859 kb on + strand, within RR42_RS22595 at 404.211 kb on - strand, within RR42_RS22595 at 404.263 kb on + strand, within RR42_RS22595 at 404.305 kb on + strand, within RR42_RS22595 at 404.463 kb on + strand at 404.464 kb on - strand at 404.516 kb on + strand at 404.581 kb on + strand at 404.582 kb on - strand at 404.582 kb on - strand at 404.782 kb on + strand, within RR42_RS22600 at 404.783 kb on - strand, within RR42_RS22600 at 404.783 kb on - strand, within RR42_RS22600 at 404.929 kb on + strand at 404.929 kb on + strand at 404.929 kb on + strand at 404.929 kb on + strand at 404.929 kb on + strand at 404.929 kb on + strand at 404.929 kb on + strand at 404.930 kb on - strand at 405.041 kb on - strand at 405.041 kb on - strand at 405.041 kb on - strand at 405.056 kb on + strand at 405.056 kb on + strand at 405.057 kb on - strand at 405.057 kb on - strand at 405.057 kb on - strand at 405.084 kb on - strand at 405.108 kb on + strand at 405.109 kb on - strand at 405.109 kb on - strand at 405.109 kb on - strand at 405.194 kb on + strand, within RR42_RS22605 at 405.229 kb on + strand, within RR42_RS22605 at 405.277 kb on - strand, within RR42_RS22605 at 405.277 kb on - strand, within RR42_RS22605 at 405.394 kb on + strand, within RR42_RS22605 at 405.447 kb on - strand at 405.447 kb on - strand at 405.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 402,767 + -0.2 402,781 + +1.6 402,781 + +0.4 402,781 + -0.6 402,781 + -0.6 402,864 - +0.6 402,866 - +0.8 402,878 - -0.2 402,946 - -0.2 402,953 - +0.2 402,990 + +0.0 402,990 + +0.2 403,059 - RR42_RS22590 0.21 -0.9 403,368 - -1.2 403,392 + -0.4 403,393 - +0.2 403,444 + -1.4 403,445 - +0.0 403,445 - +0.3 403,546 - -0.3 403,645 - RR42_RS22595 0.11 +0.2 403,645 - RR42_RS22595 0.11 -1.1 403,859 + RR42_RS22595 0.35 -0.5 404,211 - RR42_RS22595 0.72 -1.1 404,263 + RR42_RS22595 0.78 -1.3 404,305 + RR42_RS22595 0.83 -0.8 404,463 + -0.5 404,464 - +0.2 404,516 + +1.0 404,581 + +1.3 404,582 - +0.0 404,582 - -1.5 404,782 + RR42_RS22600 0.50 +0.2 404,783 - RR42_RS22600 0.50 +0.3 404,783 - RR42_RS22600 0.50 -0.1 404,929 + +0.5 404,929 + -0.6 404,929 + -0.4 404,929 + +0.9 404,929 + -0.8 404,929 + +0.9 404,929 + -0.3 404,930 - -0.4 405,041 - +1.0 405,041 - +0.8 405,041 - -0.1 405,056 + +2.3 405,056 + -0.1 405,057 - -0.9 405,057 - +1.2 405,057 - +0.5 405,084 - +0.4 405,108 + -0.4 405,109 - -0.7 405,109 - -0.4 405,109 - -0.0 405,194 + RR42_RS22605 0.31 -0.4 405,229 + RR42_RS22605 0.41 +0.2 405,277 - RR42_RS22605 0.54 +0.4 405,277 - RR42_RS22605 0.54 -0.3 405,394 + RR42_RS22605 0.85 +0.8 405,447 - +0.1 405,447 - +0.5 405,447 - -0.6
Or see this region's nucleotide sequence