Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21865 and RR42_RS21870 are separated by 165 nucleotides RR42_RS21870 and RR42_RS21875 are separated by 56 nucleotides RR42_RS21875 and RR42_RS21880 are separated by 73 nucleotides
RR42_RS21865: RR42_RS21865 - 3-ketoacyl-ACP reductase, at 231,817 to 232,560
_RS21865
RR42_RS21870: RR42_RS21870 - transcriptional regulator, at 232,726 to 233,607
_RS21870
RR42_RS21875: RR42_RS21875 - hypothetical protein, at 233,664 to 233,855
_RS21875
RR42_RS21880: RR42_RS21880 - heavy metal resistance protein CzcA, at 233,929 to 237,024
_RS21880
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.097 kb on + strand, within RR42_RS21865 at 232.097 kb on + strand, within RR42_RS21865 at 232.097 kb on + strand, within RR42_RS21865 at 232.098 kb on - strand, within RR42_RS21865 at 232.107 kb on - strand, within RR42_RS21865 at 232.235 kb on + strand, within RR42_RS21865 at 232.235 kb on + strand, within RR42_RS21865 at 232.235 kb on + strand, within RR42_RS21865 at 232.236 kb on - strand, within RR42_RS21865 at 232.236 kb on - strand, within RR42_RS21865 at 232.236 kb on - strand, within RR42_RS21865 at 232.448 kb on + strand at 232.448 kb on + strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.449 kb on - strand, within RR42_RS21865 at 232.579 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.590 kb on + strand at 232.591 kb on - strand at 232.591 kb on - strand at 232.591 kb on - strand at 232.636 kb on - strand at 232.921 kb on + strand, within RR42_RS21870 at 233.230 kb on + strand, within RR42_RS21870 at 233.230 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.293 kb on + strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.294 kb on - strand, within RR42_RS21870 at 233.401 kb on + strand, within RR42_RS21870 at 233.555 kb on + strand at 233.637 kb on + strand at 233.638 kb on - strand at 233.665 kb on + strand at 234.234 kb on - strand at 234.235 kb on - strand at 234.324 kb on + strand, within RR42_RS21880 at 234.325 kb on - strand, within RR42_RS21880 at 234.325 kb on - strand, within RR42_RS21880 at 234.410 kb on + strand, within RR42_RS21880 at 234.410 kb on + strand, within RR42_RS21880 at 234.411 kb on - strand, within RR42_RS21880
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 232,097 + RR42_RS21865 0.38 -0.6 232,097 + RR42_RS21865 0.38 -0.4 232,097 + RR42_RS21865 0.38 +0.3 232,098 - RR42_RS21865 0.38 +0.0 232,107 - RR42_RS21865 0.39 +0.9 232,235 + RR42_RS21865 0.56 +0.9 232,235 + RR42_RS21865 0.56 -0.3 232,235 + RR42_RS21865 0.56 -1.9 232,236 - RR42_RS21865 0.56 -0.1 232,236 - RR42_RS21865 0.56 +0.7 232,236 - RR42_RS21865 0.56 +0.9 232,448 + +2.1 232,448 + RR42_RS21865 0.85 +0.3 232,449 - RR42_RS21865 0.85 +0.7 232,449 - RR42_RS21865 0.85 +0.4 232,449 - RR42_RS21865 0.85 -0.5 232,449 - RR42_RS21865 0.85 +0.4 232,579 + -0.4 232,590 + -1.9 232,590 + +0.3 232,590 + +1.0 232,590 + +1.1 232,590 + -0.2 232,590 + +2.6 232,590 + -0.4 232,590 + -0.2 232,590 + +1.1 232,591 - +0.8 232,591 - +0.5 232,591 - +0.1 232,636 - -0.1 232,921 + RR42_RS21870 0.22 -1.5 233,230 + RR42_RS21870 0.57 +0.5 233,230 + RR42_RS21870 0.57 +0.3 233,293 + RR42_RS21870 0.64 -0.9 233,293 + RR42_RS21870 0.64 +0.7 233,293 + RR42_RS21870 0.64 -0.4 233,293 + RR42_RS21870 0.64 +0.2 233,294 - RR42_RS21870 0.64 +0.1 233,294 - RR42_RS21870 0.64 +0.0 233,294 - RR42_RS21870 0.64 +0.2 233,294 - RR42_RS21870 0.64 +0.0 233,294 - RR42_RS21870 0.64 -0.1 233,294 - RR42_RS21870 0.64 -1.1 233,401 + RR42_RS21870 0.77 -0.2 233,555 + -0.8 233,637 + -0.0 233,638 - +0.8 233,665 + -0.3 234,234 - -0.7 234,235 - -0.9 234,324 + RR42_RS21880 0.13 +0.8 234,325 - RR42_RS21880 0.13 +0.1 234,325 - RR42_RS21880 0.13 -0.3 234,410 + RR42_RS21880 0.16 +0.3 234,410 + RR42_RS21880 0.16 -0.0 234,411 - RR42_RS21880 0.16 -0.8
Or see this region's nucleotide sequence