Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17130

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
3,710,064	-				+0.3
3,710,072	-				-0.5
3,710,182	+				-0.4
3,710,182	+				+0.4
3,710,182	+				-1.6
3,710,182	+				+0.4
3,710,182	+				-0.3
3,710,183	-				+0.2
3,710,183	-				+0.4
3,710,183	-				-0.1
3,710,183	-				-0.8
3,710,192	+		RR42_RS17125	0.11	+1.0
3,710,192	+		RR42_RS17125	0.11	-1.8
3,710,193	-		RR42_RS17125	0.11	-1.0
3,710,193	-		RR42_RS17125	0.11	-1.1
3,710,193	-		RR42_RS17125	0.11	-0.2
3,710,193	-		RR42_RS17125	0.11	-0.2
3,710,195	+		RR42_RS17125	0.11	-0.1
3,710,195	+		RR42_RS17125	0.11	+0.2
3,710,195	+		RR42_RS17125	0.11	-1.0
3,710,195	+		RR42_RS17125	0.11	-1.0
3,710,195	+		RR42_RS17125	0.11	+0.8
3,710,196	-		RR42_RS17125	0.11	-1.8
3,710,196	-		RR42_RS17125	0.11	+0.3
3,710,196	-		RR42_RS17125	0.11	+0.7
3,710,196	-		RR42_RS17125	0.11	-0.8
3,710,282	+		RR42_RS17125	0.24	+0.0
3,710,297	+		RR42_RS17125	0.26	-0.2
3,710,297	+		RR42_RS17125	0.26	-0.6
3,710,297	+		RR42_RS17125	0.26	-0.6
3,710,297	+		RR42_RS17125	0.26	+0.1
3,710,298	-		RR42_RS17125	0.26	-1.1
3,710,298	-		RR42_RS17125	0.26	-0.0
3,710,298	-		RR42_RS17125	0.26	+0.1
3,710,298	-		RR42_RS17125	0.26	+1.1
3,710,314	+		RR42_RS17125	0.28	+2.0
3,710,314	+		RR42_RS17125	0.28	-0.2
3,710,314	+		RR42_RS17125	0.28	+0.2
3,710,314	+		RR42_RS17125	0.28	+0.4
3,710,315	-		RR42_RS17125	0.28	+1.4
3,710,315	-		RR42_RS17125	0.28	-0.3
3,710,315	-		RR42_RS17125	0.28	-0.1
3,710,331	+		RR42_RS17125	0.31	-0.1
3,710,331	+		RR42_RS17125	0.31	+0.0
3,710,332	-		RR42_RS17125	0.31	-0.1
3,710,373	+		RR42_RS17125	0.37	-0.1
3,710,373	+		RR42_RS17125	0.37	+0.6
3,710,373	+		RR42_RS17125	0.37	-0.7
3,710,373	+		RR42_RS17125	0.37	-0.1
3,710,374	-		RR42_RS17125	0.37	+0.0
3,710,423	+		RR42_RS17125	0.44	+0.2
3,710,423	+		RR42_RS17125	0.44	+0.0
3,710,423	+		RR42_RS17125	0.44	-0.2
3,710,424	-		RR42_RS17125	0.44	+0.4
3,710,424	-		RR42_RS17125	0.44	-0.3
3,710,424	-		RR42_RS17125	0.44	-2.1
3,710,459	+		RR42_RS17125	0.49	-0.2
3,710,459	+		RR42_RS17125	0.49	-0.2
3,710,459	+		RR42_RS17125	0.49	+0.0
3,710,459	+		RR42_RS17125	0.49	+0.1
3,710,460	-		RR42_RS17125	0.49	+1.0
3,710,460	-		RR42_RS17125	0.49	+1.2
3,710,460	-		RR42_RS17125	0.49	-0.5
3,710,460	-		RR42_RS17125	0.49	+0.0
3,710,460	-		RR42_RS17125	0.49	-0.4
3,710,466	-		RR42_RS17125	0.50	-0.0
3,710,470	+		RR42_RS17125	0.50	+1.0
3,710,470	+		RR42_RS17125	0.50	-0.2
3,710,470	+		RR42_RS17125	0.50	-0.8
3,710,592	-		RR42_RS17125	0.68	+1.5
3,710,592	-		RR42_RS17125	0.68	+1.0
3,710,592	-		RR42_RS17125	0.68	+1.1
3,710,592	-		RR42_RS17125	0.68	-0.2
3,710,592	-		RR42_RS17125	0.68	-0.2
3,710,631	+		RR42_RS17125	0.73	-0.6
3,710,631	+		RR42_RS17125	0.73	+0.0
3,710,632	-		RR42_RS17125	0.74	+1.6
3,710,632	-		RR42_RS17125	0.74	+0.1
3,710,693	+		RR42_RS17125	0.82	-0.4
3,710,694	-		RR42_RS17125	0.82	-0.4
3,710,694	-		RR42_RS17125	0.82	+1.9
3,710,723	+		RR42_RS17125	0.86	-0.6
3,710,751	-				+0.4
3,710,751	-				+0.3
3,710,751	-				-0.4
3,710,886	-				+1.2
3,711,009	+				+0.8
3,711,009	+				+0.6
3,711,010	-				-0.6
3,711,010	-				-0.0
3,711,201	+		RR42_RS17130	0.44	+1.4
3,711,201	+		RR42_RS17130	0.44	+0.7
3,711,202	-		RR42_RS17130	0.44	+0.8
3,711,202	-		RR42_RS17130	0.44	+0.2
3,711,202	-		RR42_RS17130	0.44	+0.6
3,711,202	-		RR42_RS17130	0.44	+1.0
3,711,204	+		RR42_RS17130	0.45	+1.6
3,711,204	+		RR42_RS17130	0.45	+0.6
3,711,205	-		RR42_RS17130	0.45	+0.4
3,711,205	-		RR42_RS17130	0.45	+0.0
3,711,205	-		RR42_RS17130	0.45	+0.3
3,711,205	-		RR42_RS17130	0.45	-0.6
3,711,260	+		RR42_RS17130	0.61	+0.9
3,711,260	+		RR42_RS17130	0.61	+0.3
3,711,283	+		RR42_RS17130	0.68	+0.1
3,711,284	-		RR42_RS17130	0.68	+2.0
3,711,284	-		RR42_RS17130	0.68	+0.6
3,711,284	-		RR42_RS17130	0.68	-0.6
3,711,309	+		RR42_RS17130	0.76	+0.5
3,711,434	+				-2.2
3,711,434	+				-0.2
3,711,434	+				-0.3
3,711,434	+				+1.0
3,711,434	+				-0.2
3,711,434	+				-0.2
3,711,434	+				-1.9
3,711,434	+				-0.8
3,711,434	+				-0.4
3,711,434	+				+0.1
3,711,434	+				-0.2
3,711,434	+				+0.0
3,711,434	+				-0.2
3,711,434	+				-1.8
3,711,434	+				-0.1
3,711,434	+				-1.3
3,711,435	-				+1.0
3,711,435	-				+1.1
3,711,435	-				+1.0
3,711,435	-				-0.1
3,711,435	-				+0.6
3,711,435	-				+2.4
3,711,435	-				+1.8
3,711,435	-				+0.0
3,711,459	-				-0.9
3,711,459	-				+1.0
3,711,459	-				+0.6
3,711,477	-				+0.0
3,711,542	-				-0.0
3,711,565	+				+0.1
3,711,565	+				-0.0
3,711,566	-				+0.4
3,711,584	+				+0.6
3,711,585	-				-1.5
3,711,587	+				+0.4
3,711,587	+				+0.1
3,711,588	-				+0.4
3,711,588	-				+0.6
3,711,597	+				-0.1
3,711,675	+				-0.1
3,711,675	+				+0.4
3,711,675	+				-0.2
3,711,675	+				+0.7
3,711,675	+				-0.5
3,711,676	-				+1.0
3,711,679	+				+0.1
3,711,679	+				+0.0
3,711,679	+				-0.1
3,711,679	+				-0.4
3,711,679	+				-0.9
3,711,679	+				-0.2
3,711,679	+				+0.0
3,711,680	-				-0.2
3,711,680	-				+0.1
3,711,680	-				+0.3
3,711,680	-				-0.8
3,711,680	-				+0.2
3,711,680	-				+1.0
3,711,753	+				-0.5
3,711,753	+				+0.0
3,711,753	+				-2.3
3,711,753	+				+0.2
3,711,753	+				-1.3
3,711,753	+				+0.0
3,711,753	+				+0.1
3,711,754	-				-0.2
3,711,754	-				-0.3
3,711,754	-				-1.1
3,711,754	-				+0.2
3,711,876	+		RR42_RS17135	0.16	-2.4
3,711,876	+		RR42_RS17135	0.16	+0.4
3,711,876	+		RR42_RS17135	0.16	+1.6
3,711,877	-		RR42_RS17135	0.16	+2.6
3,711,877	-		RR42_RS17135	0.16	-2.1
3,711,877	-		RR42_RS17135	0.16	+0.3
3,711,877	-		RR42_RS17135	0.16	+0.6
3,711,877	-		RR42_RS17135	0.16	+0.2
3,711,877	-		RR42_RS17135	0.16	-1.2
3,711,891	+		RR42_RS17135	0.17	-0.7
3,711,891	+		RR42_RS17135	0.17	+0.3
3,711,891	+		RR42_RS17135	0.17	+0.1
3,711,892	-		RR42_RS17135	0.17	+0.0
3,712,000	+		RR42_RS17135	0.26	-0.2
3,712,000	+		RR42_RS17135	0.26	-0.2
3,712,001	-		RR42_RS17135	0.26	-1.1
3,712,002	+		RR42_RS17135	0.26	+0.2
3,712,002	+		RR42_RS17135	0.26	-0.2
3,712,002	+		RR42_RS17135	0.26	+0.1
3,712,003	-		RR42_RS17135	0.26	-0.6
3,712,003	-		RR42_RS17135	0.26	+0.7
3,712,003	-		RR42_RS17135	0.26	+0.0
3,712,039	-		RR42_RS17135	0.29	+0.8
3,712,188	+		RR42_RS17135	0.41	-0.8
3,712,188	+		RR42_RS17135	0.41	-0.2
3,712,188	+		RR42_RS17135	0.41	-2.5
3,712,189	-		RR42_RS17135	0.41	+0.3
3,712,349	-		RR42_RS17135	0.54	-0.5