Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11515 and RR42_RS11520 overlap by 4 nucleotides RR42_RS11520 and RR42_RS11525 overlap by 1 nucleotides RR42_RS11525 and RR42_RS11530 are separated by 228 nucleotides RR42_RS11530 and RR42_RS11535 are separated by 50 nucleotides
RR42_RS11515: RR42_RS11515 - hypothetical protein, at 2,462,253 to 2,463,263
_RS11515
RR42_RS11520: RR42_RS11520 - ABC transporter ATP-binding protein, at 2,463,260 to 2,464,048
_RS11520
RR42_RS11525: RR42_RS11525 - hypothetical protein, at 2,464,048 to 2,465,043
_RS11525
RR42_RS11530: RR42_RS11530 - LuxR family transcriptional regulator, at 2,465,272 to 2,465,895
_RS11530
RR42_RS11535: RR42_RS11535 - hypothetical protein, at 2,465,946 to 2,467,307
_RS11535
Position (kb)
2464
2465
2466 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2463.109 kb on + strand, within RR42_RS11515 at 2463.110 kb on - strand, within RR42_RS11515 at 2463.835 kb on + strand, within RR42_RS11520 at 2463.836 kb on - strand, within RR42_RS11520 at 2464.124 kb on + strand at 2464.152 kb on - strand, within RR42_RS11525 at 2464.202 kb on + strand, within RR42_RS11525 at 2464.203 kb on - strand, within RR42_RS11525 at 2464.733 kb on + strand, within RR42_RS11525 at 2464.764 kb on - strand, within RR42_RS11525 at 2464.890 kb on + strand, within RR42_RS11525 at 2464.890 kb on + strand, within RR42_RS11525 at 2465.211 kb on + strand at 2465.212 kb on - strand at 2465.298 kb on - strand at 2465.355 kb on - strand, within RR42_RS11530 at 2465.355 kb on - strand, within RR42_RS11530 at 2465.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 2,463,109 + RR42_RS11515 0.85 +0.1 2,463,110 - RR42_RS11515 0.85 -0.2 2,463,835 + RR42_RS11520 0.73 -0.1 2,463,836 - RR42_RS11520 0.73 +0.4 2,464,124 + +1.7 2,464,152 - RR42_RS11525 0.10 -1.5 2,464,202 + RR42_RS11525 0.15 -0.3 2,464,203 - RR42_RS11525 0.16 -3.4 2,464,733 + RR42_RS11525 0.69 -0.9 2,464,764 - RR42_RS11525 0.72 -0.2 2,464,890 + RR42_RS11525 0.85 -1.0 2,464,890 + RR42_RS11525 0.85 -0.5 2,465,211 + -0.1 2,465,212 - +0.1 2,465,298 - +0.6 2,465,355 - RR42_RS11530 0.13 +0.0 2,465,355 - RR42_RS11530 0.13 +0.2 2,465,878 + -0.4
Or see this region's nucleotide sequence