Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11525

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11515 and RR42_RS11520 overlap by 4 nucleotidesRR42_RS11520 and RR42_RS11525 overlap by 1 nucleotidesRR42_RS11525 and RR42_RS11530 are separated by 228 nucleotidesRR42_RS11530 and RR42_RS11535 are separated by 50 nucleotides RR42_RS11515: RR42_RS11515 - hypothetical protein, at 2,462,253 to 2,463,263 _RS11515 RR42_RS11520: RR42_RS11520 - ABC transporter ATP-binding protein, at 2,463,260 to 2,464,048 _RS11520 RR42_RS11525: RR42_RS11525 - hypothetical protein, at 2,464,048 to 2,465,043 _RS11525 RR42_RS11530: RR42_RS11530 - LuxR family transcriptional regulator, at 2,465,272 to 2,465,895 _RS11530 RR42_RS11535: RR42_RS11535 - hypothetical protein, at 2,465,946 to 2,467,307 _RS11535 Position (kb) 2464 2465 2466Strain fitness (log2 ratio) -3 -2 -1 0 1at 2463.109 kb on + strand, within RR42_RS11515at 2463.110 kb on - strand, within RR42_RS11515at 2463.835 kb on + strand, within RR42_RS11520at 2463.836 kb on - strand, within RR42_RS11520at 2464.124 kb on + strandat 2464.152 kb on - strand, within RR42_RS11525at 2464.202 kb on + strand, within RR42_RS11525at 2464.203 kb on - strand, within RR42_RS11525at 2464.733 kb on + strand, within RR42_RS11525at 2464.764 kb on - strand, within RR42_RS11525at 2464.890 kb on + strand, within RR42_RS11525at 2464.890 kb on + strand, within RR42_RS11525at 2465.211 kb on + strandat 2465.212 kb on - strandat 2465.298 kb on - strandat 2465.355 kb on - strand, within RR42_RS11530at 2465.355 kb on - strand, within RR42_RS11530at 2465.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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2,463,109 + RR42_RS11515 0.85 +0.1
2,463,110 - RR42_RS11515 0.85 -0.2
2,463,835 + RR42_RS11520 0.73 -0.1
2,463,836 - RR42_RS11520 0.73 +0.4
2,464,124 + +1.7
2,464,152 - RR42_RS11525 0.10 -1.5
2,464,202 + RR42_RS11525 0.15 -0.3
2,464,203 - RR42_RS11525 0.16 -3.4
2,464,733 + RR42_RS11525 0.69 -0.9
2,464,764 - RR42_RS11525 0.72 -0.2
2,464,890 + RR42_RS11525 0.85 -1.0
2,464,890 + RR42_RS11525 0.85 -0.5
2,465,211 + -0.1
2,465,212 - +0.1
2,465,298 - +0.6
2,465,355 - RR42_RS11530 0.13 +0.0
2,465,355 - RR42_RS11530 0.13 +0.2
2,465,878 + -0.4

Or see this region's nucleotide sequence