Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04360 and RR42_RS04365 are separated by 78 nucleotides RR42_RS04365 and RR42_RS04370 are separated by 247 nucleotides
RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871
_RS04360
RR42_RS04365: RR42_RS04365 - tRNA-Ser, at 970,950 to 971,039
_RS04365
RR42_RS04370: RR42_RS04370 - hypothetical protein, at 971,287 to 972,186
_RS04370
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.284 kb on - strand at 971.284 kb on - strand at 971.380 kb on + strand, within RR42_RS04370 at 971.380 kb on + strand, within RR42_RS04370 at 971.407 kb on + strand, within RR42_RS04370 at 971.408 kb on - strand, within RR42_RS04370 at 971.422 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.668 kb on + strand, within RR42_RS04370 at 971.669 kb on - strand, within RR42_RS04370 at 971.773 kb on + strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.884 kb on - strand, within RR42_RS04370 at 971.884 kb on - strand, within RR42_RS04370 at 972.365 kb on - strand at 972.719 kb on + strand at 972.803 kb on + strand at 972.803 kb on + strand at 972.863 kb on + strand at 972.863 kb on + strand at 972.864 kb on - strand at 972.864 kb on - strand at 972.909 kb on + strand at 972.971 kb on + strand at 972.972 kb on - strand at 973.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 971,284 - +1.1 971,284 - -0.0 971,380 + RR42_RS04370 0.10 -0.4 971,380 + RR42_RS04370 0.10 -0.0 971,407 + RR42_RS04370 0.13 -0.6 971,408 - RR42_RS04370 0.13 +0.5 971,422 + RR42_RS04370 0.15 -0.8 971,476 + RR42_RS04370 0.21 -0.6 971,476 + -0.7 971,476 + RR42_RS04370 0.21 +0.3 971,476 + RR42_RS04370 0.21 +0.0 971,476 + RR42_RS04370 0.21 +2.1 971,476 + RR42_RS04370 0.21 +0.2 971,477 - RR42_RS04370 0.21 +0.2 971,477 - RR42_RS04370 0.21 -0.2 971,477 - RR42_RS04370 0.21 -0.7 971,477 - RR42_RS04370 0.21 -1.4 971,647 + RR42_RS04370 0.40 +0.9 971,647 + RR42_RS04370 0.40 +0.4 971,668 + RR42_RS04370 0.42 +1.7 971,669 - RR42_RS04370 0.42 -0.9 971,773 + RR42_RS04370 0.54 -0.3 971,774 - RR42_RS04370 0.54 -1.5 971,774 - RR42_RS04370 0.54 +0.0 971,774 - RR42_RS04370 0.54 +0.3 971,884 - RR42_RS04370 0.66 +0.4 971,884 - RR42_RS04370 0.66 +0.4 972,365 - -1.3 972,719 + +0.5 972,803 + +0.9 972,803 + -0.3 972,863 + +0.9 972,863 + -0.5 972,864 - +0.2 972,864 - +1.2 972,909 + -0.6 972,971 + -2.9 972,972 - +0.2 973,052 + -0.5
Or see this region's nucleotide sequence