Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01850 and RR42_RS01855 are separated by 21 nucleotides RR42_RS01855 and RR42_RS01860 are separated by 70 nucleotides RR42_RS01860 and RR42_RS01865 are separated by 141 nucleotides
RR42_RS01850: RR42_RS01850 - ABC transporter substrate-binding protein, at 418,375 to 419,367
_RS01850
RR42_RS01855: RR42_RS01855 - rRNA methylase, at 419,389 to 419,859
_RS01855
RR42_RS01860: RR42_RS01860 - amidophosphoribosyltransferase, at 419,930 to 420,661
_RS01860
RR42_RS01865: RR42_RS01865 - amidophosphoribosyltransferase, at 420,803 to 421,816
_RS01865
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1 at 419.260 kb on + strand, within RR42_RS01850 at 419.260 kb on + strand, within RR42_RS01850 at 419.261 kb on - strand, within RR42_RS01850 at 419.261 kb on - strand, within RR42_RS01850 at 419.261 kb on - strand, within RR42_RS01850 at 419.366 kb on - strand at 419.366 kb on - strand at 419.449 kb on - strand, within RR42_RS01855 at 419.699 kb on + strand, within RR42_RS01855 at 419.699 kb on + strand, within RR42_RS01855 at 419.700 kb on - strand, within RR42_RS01855 at 419.700 kb on - strand, within RR42_RS01855 at 419.700 kb on - strand, within RR42_RS01855 at 419.708 kb on + strand, within RR42_RS01855 at 419.708 kb on + strand, within RR42_RS01855 at 419.709 kb on - strand, within RR42_RS01855 at 419.709 kb on - strand, within RR42_RS01855 at 419.709 kb on - strand, within RR42_RS01855 at 419.709 kb on - strand, within RR42_RS01855 at 419.803 kb on + strand, within RR42_RS01855 at 419.803 kb on + strand, within RR42_RS01855 at 419.804 kb on - strand, within RR42_RS01855 at 419.909 kb on + strand at 419.910 kb on - strand at 419.910 kb on - strand at 420.420 kb on + strand, within RR42_RS01860 at 420.463 kb on - strand, within RR42_RS01860 at 420.463 kb on - strand, within RR42_RS01860 at 420.761 kb on + strand at 420.761 kb on + strand at 420.761 kb on + strand at 420.761 kb on + strand at 420.761 kb on + strand at 420.844 kb on + strand at 420.844 kb on + strand at 420.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 419,260 + RR42_RS01850 0.89 +0.0 419,260 + RR42_RS01850 0.89 -1.0 419,261 - RR42_RS01850 0.89 -0.2 419,261 - RR42_RS01850 0.89 -0.8 419,261 - RR42_RS01850 0.89 +0.2 419,366 - +0.4 419,366 - +0.6 419,449 - RR42_RS01855 0.13 +0.0 419,699 + RR42_RS01855 0.66 +0.5 419,699 + RR42_RS01855 0.66 +1.1 419,700 - RR42_RS01855 0.66 -0.5 419,700 - RR42_RS01855 0.66 -0.3 419,700 - RR42_RS01855 0.66 +0.9 419,708 + RR42_RS01855 0.68 +0.9 419,708 + RR42_RS01855 0.68 +0.8 419,709 - RR42_RS01855 0.68 -0.9 419,709 - RR42_RS01855 0.68 +0.0 419,709 - RR42_RS01855 0.68 -0.6 419,709 - RR42_RS01855 0.68 +0.1 419,803 + RR42_RS01855 0.88 -0.4 419,803 + RR42_RS01855 0.88 +0.2 419,804 - RR42_RS01855 0.88 +0.5 419,909 + -1.1 419,910 - -0.4 419,910 - -2.1 420,420 + RR42_RS01860 0.67 -0.2 420,463 - RR42_RS01860 0.73 +0.9 420,463 - RR42_RS01860 0.73 +1.3 420,761 + +0.1 420,761 + +0.5 420,761 + +0.1 420,761 + -0.0 420,761 + -0.4 420,844 + -0.0 420,844 + +0.0 420,902 + -0.9
Or see this region's nucleotide sequence