Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00775 and RR42_RS00780 are separated by 238 nucleotides RR42_RS00780 and RR42_RS00785 are separated by 316 nucleotides RR42_RS00785 and RR42_RS00790 are separated by 109 nucleotides RR42_RS00790 and RR42_RS00795 are separated by 105 nucleotides RR42_RS00795 and RR42_RS00800 are separated by 107 nucleotides
RR42_RS00775: RR42_RS00775 - methionine synthase, at 192,720 to 195,467
_RS00775
RR42_RS00780: RR42_RS00780 - hypothetical protein, at 195,706 to 196,065
_RS00780
RR42_RS00785: RR42_RS00785 - LuxR family transcriptional regulator, at 196,382 to 197,014
_RS00785
RR42_RS00790: RR42_RS00790 - chemotaxis protein CheY, at 197,124 to 197,531
_RS00790
RR42_RS00795: RR42_RS00795 - bacteriolytic lipoprotein entericidin AB, at 197,637 to 197,780
_RS00795
RR42_RS00800: RR42_RS00800 - histidine kinase, at 197,888 to 199,342
_RS00800
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 195.404 kb on + strand at 195.580 kb on + strand at 195.581 kb on - strand at 195.587 kb on + strand at 195.587 kb on + strand at 195.587 kb on + strand at 195.588 kb on - strand at 195.597 kb on + strand at 195.597 kb on + strand at 195.597 kb on + strand at 195.598 kb on - strand at 195.598 kb on - strand at 195.598 kb on - strand at 195.598 kb on - strand at 195.633 kb on - strand at 195.693 kb on + strand at 196.063 kb on + strand at 196.063 kb on + strand at 196.064 kb on - strand at 196.188 kb on + strand at 196.188 kb on + strand at 196.189 kb on - strand at 196.189 kb on - strand at 196.189 kb on - strand at 196.189 kb on - strand at 196.189 kb on - strand at 196.192 kb on + strand at 196.193 kb on - strand at 196.322 kb on + strand at 196.323 kb on - strand at 196.441 kb on + strand at 196.544 kb on - strand, within RR42_RS00785 at 196.683 kb on - strand, within RR42_RS00785 at 196.751 kb on + strand, within RR42_RS00785 at 196.751 kb on + strand, within RR42_RS00785 at 196.929 kb on - strand, within RR42_RS00785 at 196.929 kb on - strand, within RR42_RS00785 at 196.982 kb on + strand at 196.982 kb on + strand at 196.982 kb on + strand at 196.983 kb on - strand at 196.986 kb on - strand at 197.047 kb on - strand at 197.101 kb on + strand at 197.174 kb on - strand, within RR42_RS00790 at 197.201 kb on + strand, within RR42_RS00790 at 197.202 kb on - strand, within RR42_RS00790 at 197.299 kb on - strand, within RR42_RS00790 at 197.299 kb on - strand, within RR42_RS00790 at 197.397 kb on + strand, within RR42_RS00790 at 197.397 kb on + strand, within RR42_RS00790 at 197.398 kb on - strand, within RR42_RS00790 at 197.398 kb on - strand, within RR42_RS00790 at 197.398 kb on - strand, within RR42_RS00790 at 197.420 kb on + strand, within RR42_RS00790 at 197.421 kb on - strand, within RR42_RS00790 at 197.421 kb on - strand, within RR42_RS00790 at 197.424 kb on + strand, within RR42_RS00790 at 197.511 kb on + strand at 197.512 kb on - strand at 197.546 kb on + strand at 197.547 kb on - strand at 197.565 kb on - strand at 197.565 kb on - strand at 197.568 kb on + strand at 197.568 kb on + strand at 197.569 kb on - strand at 197.573 kb on + strand at 197.574 kb on - strand at 197.574 kb on - strand at 197.778 kb on + strand at 197.778 kb on + strand at 197.778 kb on + strand at 197.778 kb on + strand at 197.778 kb on + strand at 197.779 kb on - strand at 197.779 kb on - strand at 197.779 kb on - strand at 197.779 kb on - strand at 197.825 kb on - strand at 197.889 kb on + strand at 197.889 kb on + strand at 197.890 kb on - strand at 197.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 195,404 + -1.0 195,580 + +0.6 195,581 - +0.5 195,587 + -0.4 195,587 + -0.8 195,587 + -0.5 195,588 - -1.2 195,597 + -1.5 195,597 + +0.5 195,597 + -1.0 195,598 - -0.1 195,598 - +0.1 195,598 - -0.0 195,598 - +0.3 195,633 - -0.0 195,693 + +1.2 196,063 + +0.3 196,063 + -0.6 196,064 - -0.5 196,188 + +0.5 196,188 + +0.4 196,189 - +0.3 196,189 - +0.4 196,189 - -0.1 196,189 - -1.2 196,189 - -0.8 196,192 + +1.2 196,193 - +0.1 196,322 + +0.5 196,323 - +0.1 196,441 + -0.1 196,544 - RR42_RS00785 0.26 -1.0 196,683 - RR42_RS00785 0.48 -0.8 196,751 + RR42_RS00785 0.58 -3.0 196,751 + RR42_RS00785 0.58 -1.0 196,929 - RR42_RS00785 0.86 +0.2 196,929 - RR42_RS00785 0.86 +0.1 196,982 + -0.4 196,982 + +0.3 196,982 + +0.4 196,983 - +0.3 196,986 - +0.3 197,047 - -0.5 197,101 + +0.0 197,174 - RR42_RS00790 0.12 -0.1 197,201 + RR42_RS00790 0.19 +0.3 197,202 - RR42_RS00790 0.19 -0.1 197,299 - RR42_RS00790 0.43 +0.5 197,299 - RR42_RS00790 0.43 +0.0 197,397 + RR42_RS00790 0.67 -0.5 197,397 + RR42_RS00790 0.67 +0.2 197,398 - RR42_RS00790 0.67 +0.1 197,398 - RR42_RS00790 0.67 -0.2 197,398 - RR42_RS00790 0.67 -0.3 197,420 + RR42_RS00790 0.73 +0.4 197,421 - RR42_RS00790 0.73 -0.0 197,421 - RR42_RS00790 0.73 -0.2 197,424 + RR42_RS00790 0.74 +0.6 197,511 + +0.5 197,512 - -3.1 197,546 + +0.0 197,547 - +1.0 197,565 - +1.0 197,565 - -0.5 197,568 + -0.0 197,568 + +0.2 197,569 - -1.0 197,573 + +0.5 197,574 - +1.5 197,574 - -0.4 197,778 + -0.7 197,778 + -0.0 197,778 + +0.1 197,778 + +0.8 197,778 + +0.2 197,779 - +0.9 197,779 - -0.2 197,779 - +0.2 197,779 - -0.3 197,825 - +0.3 197,889 + -0.1 197,889 + -1.0 197,890 - -0.1 197,890 - -0.6
Or see this region's nucleotide sequence