Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00250 and RR42_RS00255 are separated by 271 nucleotides RR42_RS00255 and RR42_RS00260 are separated by 55 nucleotides RR42_RS00260 and RR42_RS00265 are separated by 71 nucleotides
RR42_RS00250: RR42_RS00250 - GntR family transcriptional regulator, at 76,120 to 77,166
_RS00250
RR42_RS00255: RR42_RS00255 - ABC transporter permease, at 77,438 to 78,121
_RS00255
RR42_RS00260: RR42_RS00260 - amino acid ABC transporter permease, at 78,177 to 78,821
_RS00260
RR42_RS00265: RR42_RS00265 - phosphate ABC transporter ATP-binding protein, at 78,893 to 79,621
_RS00265
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.461 kb on - strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.667 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 77.006 kb on - strand, within RR42_RS00250 at 77.069 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.277 kb on - strand at 77.444 kb on + strand at 77.444 kb on + strand at 77.616 kb on - strand, within RR42_RS00255 at 77.739 kb on + strand, within RR42_RS00255 at 77.750 kb on - strand, within RR42_RS00255 at 77.879 kb on + strand, within RR42_RS00255 at 77.880 kb on - strand, within RR42_RS00255 at 77.880 kb on - strand, within RR42_RS00255 at 78.008 kb on + strand, within RR42_RS00255 at 78.209 kb on + strand at 78.390 kb on + strand, within RR42_RS00260 at 78.391 kb on - strand, within RR42_RS00260 at 78.459 kb on + strand, within RR42_RS00260 at 78.460 kb on - strand, within RR42_RS00260 at 78.460 kb on - strand, within RR42_RS00260 at 78.472 kb on - strand, within RR42_RS00260 at 78.651 kb on + strand, within RR42_RS00260 at 78.652 kb on - strand, within RR42_RS00260 at 78.753 kb on + strand, within RR42_RS00260 at 78.753 kb on + strand, within RR42_RS00260 at 78.754 kb on - strand, within RR42_RS00260 at 78.789 kb on + strand at 78.790 kb on - strand at 79.080 kb on + strand, within RR42_RS00265 at 79.081 kb on - strand, within RR42_RS00265 at 79.081 kb on - strand, within RR42_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 76,461 - RR42_RS00250 0.33 -0.3 76,666 + RR42_RS00250 0.52 -1.5 76,666 + RR42_RS00250 0.52 -0.6 76,667 - RR42_RS00250 0.52 -1.8 76,779 - RR42_RS00250 0.63 -0.7 76,779 - RR42_RS00250 0.63 -0.1 77,006 - RR42_RS00250 0.85 -0.5 77,069 + -1.9 77,276 + +0.2 77,276 + -0.4 77,276 + -0.4 77,276 + +0.2 77,276 + -0.2 77,277 - -1.6 77,444 + -0.2 77,444 + +0.8 77,616 - RR42_RS00255 0.26 -0.0 77,739 + RR42_RS00255 0.44 -1.9 77,750 - RR42_RS00255 0.46 -0.7 77,879 + RR42_RS00255 0.64 -0.9 77,880 - RR42_RS00255 0.65 +0.2 77,880 - RR42_RS00255 0.65 -0.1 78,008 + RR42_RS00255 0.83 +0.3 78,209 + +0.4 78,390 + RR42_RS00260 0.33 +0.2 78,391 - RR42_RS00260 0.33 +0.2 78,459 + RR42_RS00260 0.44 -0.7 78,460 - RR42_RS00260 0.44 -0.7 78,460 - RR42_RS00260 0.44 +0.4 78,472 - RR42_RS00260 0.46 -0.1 78,651 + RR42_RS00260 0.73 -2.1 78,652 - RR42_RS00260 0.74 -1.3 78,753 + RR42_RS00260 0.89 -0.1 78,753 + RR42_RS00260 0.89 -0.3 78,754 - RR42_RS00260 0.89 -0.4 78,789 + -0.4 78,790 - +0.2 79,080 + RR42_RS00265 0.26 +1.9 79,081 - RR42_RS00265 0.26 -0.2 79,081 - RR42_RS00265 0.26 +0.5
Or see this region's nucleotide sequence