Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4482

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4481 and Pf6N2E2_4482 are separated by 61 nucleotidesPf6N2E2_4482 and Pf6N2E2_4483 are separated by 1 nucleotides Pf6N2E2_4481 - 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-), at 5,212,635 to 5,213,822 _4481 Pf6N2E2_4482 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 5,213,884 to 5,215,107 _4482 Pf6N2E2_4483 - Ferric iron ABC transporter, iron-binding protein, at 5,215,109 to 5,216,269 _4483 Position (kb) 5213 5214 5215 5216Strain fitness (log2 ratio) -2 -1 0 1 2at 5215.124 kb on + strandat 5215.125 kb on - strandat 5215.125 kb on - strandat 5215.125 kb on - strandat 5215.125 kb on - strandat 5215.326 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.352 kb on + strand, within Pf6N2E2_4483at 5215.353 kb on - strand, within Pf6N2E2_4483at 5215.353 kb on - strand, within Pf6N2E2_4483at 5215.353 kb on - strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.397 kb on + strand, within Pf6N2E2_4483at 5215.398 kb on - strand, within Pf6N2E2_4483at 5215.398 kb on - strand, within Pf6N2E2_4483at 5215.398 kb on - strand, within Pf6N2E2_4483at 5215.656 kb on - strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.694 kb on + strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.695 kb on - strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.757 kb on + strand, within Pf6N2E2_4483at 5215.758 kb on - strand, within Pf6N2E2_4483at 5215.758 kb on - strand, within Pf6N2E2_4483at 5215.758 kb on - strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.921 kb on + strand, within Pf6N2E2_4483at 5215.922 kb on - strand, within Pf6N2E2_4483at 5215.922 kb on - strand, within Pf6N2E2_4483at 5215.922 kb on - strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.925 kb on + strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.926 kb on - strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.928 kb on + strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.929 kb on - strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.931 kb on + strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483at 5215.932 kb on - strand, within Pf6N2E2_4483

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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5,215,124 + +0.6
5,215,125 - +1.1
5,215,125 - -0.4
5,215,125 - -0.6
5,215,125 - +0.0
5,215,326 + Pf6N2E2_4483 0.19 -0.7
5,215,352 + Pf6N2E2_4483 0.21 -2.4
5,215,352 + Pf6N2E2_4483 0.21 +0.4
5,215,352 + Pf6N2E2_4483 0.21 +0.1
5,215,352 + Pf6N2E2_4483 0.21 +1.2
5,215,352 + Pf6N2E2_4483 0.21 +0.5
5,215,353 - Pf6N2E2_4483 0.21 +0.8
5,215,353 - Pf6N2E2_4483 0.21 -0.7
5,215,353 - Pf6N2E2_4483 0.21 -0.5
5,215,397 + Pf6N2E2_4483 0.25 +0.6
5,215,397 + Pf6N2E2_4483 0.25 +0.3
5,215,397 + Pf6N2E2_4483 0.25 +0.1
5,215,397 + Pf6N2E2_4483 0.25 -0.2
5,215,398 - Pf6N2E2_4483 0.25 +1.0
5,215,398 - Pf6N2E2_4483 0.25 +0.9
5,215,398 - Pf6N2E2_4483 0.25 +1.0
5,215,656 - Pf6N2E2_4483 0.47 -0.4
5,215,694 + Pf6N2E2_4483 0.50 -0.0
5,215,694 + Pf6N2E2_4483 0.50 +0.6
5,215,694 + Pf6N2E2_4483 0.50 +0.8
5,215,694 + Pf6N2E2_4483 0.50 +0.1
5,215,694 + Pf6N2E2_4483 0.50 -0.1
5,215,694 + Pf6N2E2_4483 0.50 +1.0
5,215,694 + Pf6N2E2_4483 0.50 -0.6
5,215,694 + Pf6N2E2_4483 0.50 -0.7
5,215,694 + Pf6N2E2_4483 0.50 -0.7
5,215,694 + Pf6N2E2_4483 0.50 +0.3
5,215,694 + Pf6N2E2_4483 0.50 -0.5
5,215,695 - Pf6N2E2_4483 0.50 -0.5
5,215,695 - Pf6N2E2_4483 0.50 -0.3
5,215,695 - Pf6N2E2_4483 0.50 +0.7
5,215,695 - Pf6N2E2_4483 0.50 -0.6
5,215,695 - Pf6N2E2_4483 0.50 -0.7
5,215,695 - Pf6N2E2_4483 0.50 -0.0
5,215,695 - Pf6N2E2_4483 0.50 +0.1
5,215,757 + Pf6N2E2_4483 0.56 +0.1
5,215,757 + Pf6N2E2_4483 0.56 -0.9
5,215,757 + Pf6N2E2_4483 0.56 -0.5
5,215,757 + Pf6N2E2_4483 0.56 +0.7
5,215,758 - Pf6N2E2_4483 0.56 +0.1
5,215,758 - Pf6N2E2_4483 0.56 +0.3
5,215,758 - Pf6N2E2_4483 0.56 +0.5
5,215,921 + Pf6N2E2_4483 0.70 +0.1
5,215,921 + Pf6N2E2_4483 0.70 +0.1
5,215,921 + Pf6N2E2_4483 0.70 -0.2
5,215,921 + Pf6N2E2_4483 0.70 +0.1
5,215,921 + Pf6N2E2_4483 0.70 +0.1
5,215,922 - Pf6N2E2_4483 0.70 +0.0
5,215,922 - Pf6N2E2_4483 0.70 -0.4
5,215,922 - Pf6N2E2_4483 0.70 +0.4
5,215,925 + Pf6N2E2_4483 0.70 -1.0
5,215,925 + Pf6N2E2_4483 0.70 +0.9
5,215,925 + Pf6N2E2_4483 0.70 +1.2
5,215,925 + Pf6N2E2_4483 0.70 -0.3
5,215,925 + Pf6N2E2_4483 0.70 +0.8
5,215,925 + Pf6N2E2_4483 0.70 -0.5
5,215,925 + Pf6N2E2_4483 0.70 +0.2
5,215,925 + Pf6N2E2_4483 0.70 +0.3
5,215,925 + Pf6N2E2_4483 0.70 -0.4
5,215,925 + Pf6N2E2_4483 0.70 -0.8
5,215,925 + Pf6N2E2_4483 0.70 -0.2
5,215,925 + Pf6N2E2_4483 0.70 -0.1
5,215,925 + Pf6N2E2_4483 0.70 +0.6
5,215,925 + Pf6N2E2_4483 0.70 -0.2
5,215,925 + Pf6N2E2_4483 0.70 +0.4
5,215,925 + Pf6N2E2_4483 0.70 +0.5
5,215,926 - Pf6N2E2_4483 0.70 +1.6
5,215,926 - Pf6N2E2_4483 0.70 +0.4
5,215,926 - Pf6N2E2_4483 0.70 -0.4
5,215,926 - Pf6N2E2_4483 0.70 +0.0
5,215,926 - Pf6N2E2_4483 0.70 -0.3
5,215,926 - Pf6N2E2_4483 0.70 -0.1
5,215,926 - Pf6N2E2_4483 0.70 +1.4
5,215,926 - Pf6N2E2_4483 0.70 +0.2
5,215,926 - Pf6N2E2_4483 0.70 +0.9
5,215,926 - Pf6N2E2_4483 0.70 +0.2
5,215,926 - Pf6N2E2_4483 0.70 +0.3
5,215,926 - Pf6N2E2_4483 0.70 +0.6
5,215,926 - Pf6N2E2_4483 0.70 -0.6
5,215,926 - Pf6N2E2_4483 0.70 +0.5
5,215,926 - Pf6N2E2_4483 0.70 +0.8
5,215,926 - Pf6N2E2_4483 0.70 +1.3
5,215,926 - Pf6N2E2_4483 0.70 -0.5
5,215,926 - Pf6N2E2_4483 0.70 -0.3
5,215,926 - Pf6N2E2_4483 0.70 -0.8
5,215,926 - Pf6N2E2_4483 0.70 +0.0
5,215,926 - Pf6N2E2_4483 0.70 +0.1
5,215,926 - Pf6N2E2_4483 0.70 -0.1
5,215,928 + Pf6N2E2_4483 0.71 -0.1
5,215,928 + Pf6N2E2_4483 0.71 +0.5
5,215,928 + Pf6N2E2_4483 0.71 +0.1
5,215,928 + Pf6N2E2_4483 0.71 +0.5
5,215,928 + Pf6N2E2_4483 0.71 +0.1
5,215,928 + Pf6N2E2_4483 0.71 +0.2
5,215,928 + Pf6N2E2_4483 0.71 +0.0
5,215,928 + Pf6N2E2_4483 0.71 -0.5
5,215,928 + Pf6N2E2_4483 0.71 -0.6
5,215,929 - Pf6N2E2_4483 0.71 +2.3
5,215,929 - Pf6N2E2_4483 0.71 +0.4
5,215,929 - Pf6N2E2_4483 0.71 -0.3
5,215,929 - Pf6N2E2_4483 0.71 +0.2
5,215,929 - Pf6N2E2_4483 0.71 -0.7
5,215,931 + Pf6N2E2_4483 0.71 +1.0
5,215,931 + Pf6N2E2_4483 0.71 +0.5
5,215,931 + Pf6N2E2_4483 0.71 +0.4
5,215,931 + Pf6N2E2_4483 0.71 +0.0
5,215,932 - Pf6N2E2_4483 0.71 +0.0
5,215,932 - Pf6N2E2_4483 0.71 +0.2
5,215,932 - Pf6N2E2_4483 0.71 +1.1
5,215,932 - Pf6N2E2_4483 0.71 -0.6
5,215,932 - Pf6N2E2_4483 0.71 -0.4
5,215,932 - Pf6N2E2_4483 0.71 +0.0
5,215,932 - Pf6N2E2_4483 0.71 +0.5
5,215,932 - Pf6N2E2_4483 0.71 +0.8

Or see this region's nucleotide sequence