Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4399

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4398 and Pf6N2E2_4399 are separated by 273 nucleotidesPf6N2E2_4399 and Pf6N2E2_4400 are separated by 48 nucleotides Pf6N2E2_4398 - ATP-dependent DNA helicase Rep, at 5,126,346 to 5,128,355 _4398 Pf6N2E2_4399 - GGDEF domain/EAL domain protein, at 5,128,629 to 5,130,299 _4399 Pf6N2E2_4400 - Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog, at 5,130,348 to 5,131,748 _4400 Position (kb) 5128 5129 5130 5131Strain fitness (log2 ratio) -1 0 1 2 3at 5128.396 kb on + strandat 5128.468 kb on + strandat 5128.468 kb on + strandat 5128.468 kb on + strandat 5128.468 kb on + strandat 5128.468 kb on + strandat 5128.469 kb on - strandat 5128.586 kb on + strandat 5128.586 kb on + strandat 5128.586 kb on + strandat 5128.587 kb on - strandat 5128.587 kb on - strandat 5128.601 kb on - strandat 5128.617 kb on + strandat 5128.617 kb on + strandat 5128.664 kb on - strandat 5128.664 kb on - strandat 5128.694 kb on - strandat 5128.694 kb on - strandat 5128.781 kb on + strandat 5128.781 kb on + strandat 5128.782 kb on - strandat 5129.300 kb on + strand, within Pf6N2E2_4399at 5129.300 kb on + strand, within Pf6N2E2_4399at 5129.300 kb on + strand, within Pf6N2E2_4399at 5129.300 kb on + strand, within Pf6N2E2_4399at 5129.301 kb on - strand, within Pf6N2E2_4399at 5129.325 kb on + strand, within Pf6N2E2_4399at 5129.326 kb on - strand, within Pf6N2E2_4399at 5129.468 kb on + strand, within Pf6N2E2_4399at 5129.468 kb on + strand, within Pf6N2E2_4399at 5129.468 kb on + strand, within Pf6N2E2_4399at 5129.469 kb on - strand, within Pf6N2E2_4399at 5129.469 kb on - strand, within Pf6N2E2_4399at 5129.469 kb on - strand, within Pf6N2E2_4399at 5129.469 kb on - strand, within Pf6N2E2_4399at 5129.565 kb on + strand, within Pf6N2E2_4399at 5129.620 kb on + strand, within Pf6N2E2_4399at 5129.620 kb on + strand, within Pf6N2E2_4399at 5129.710 kb on - strand, within Pf6N2E2_4399at 5130.178 kb on + strandat 5130.252 kb on + strandat 5130.252 kb on + strandat 5130.252 kb on + strandat 5130.252 kb on + strandat 5130.252 kb on + strandat 5130.252 kb on + strandat 5130.252 kb on + strandat 5130.252 kb on + strandat 5130.253 kb on - strandat 5130.253 kb on - strandat 5130.253 kb on - strandat 5130.253 kb on - strandat 5130.253 kb on - strandat 5130.253 kb on - strandat 5130.544 kb on + strand, within Pf6N2E2_4400at 5130.545 kb on - strand, within Pf6N2E2_4400at 5130.836 kb on - strand, within Pf6N2E2_4400at 5130.836 kb on - strand, within Pf6N2E2_4400at 5130.865 kb on + strand, within Pf6N2E2_4400at 5130.866 kb on - strand, within Pf6N2E2_4400at 5130.997 kb on + strand, within Pf6N2E2_4400at 5130.997 kb on + strand, within Pf6N2E2_4400at 5130.997 kb on + strand, within Pf6N2E2_4400at 5130.998 kb on - strand, within Pf6N2E2_4400at 5130.998 kb on - strand, within Pf6N2E2_4400at 5131.091 kb on - strand, within Pf6N2E2_4400at 5131.109 kb on + strand, within Pf6N2E2_4400at 5131.110 kb on - strand, within Pf6N2E2_4400at 5131.110 kb on - strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.217 kb on - strand, within Pf6N2E2_4400

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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5,128,396 + -0.8
5,128,468 + -0.6
5,128,468 + -0.7
5,128,468 + -0.4
5,128,468 + +0.1
5,128,468 + -0.1
5,128,469 - -0.2
5,128,586 + -0.6
5,128,586 + +0.4
5,128,586 + -1.0
5,128,587 - +0.8
5,128,587 - -0.1
5,128,601 - +1.2
5,128,617 + -0.2
5,128,617 + +1.1
5,128,664 - +1.8
5,128,664 - +0.8
5,128,694 - -0.0
5,128,694 - +0.0
5,128,781 + -0.7
5,128,781 + +0.1
5,128,782 - -0.6
5,129,300 + Pf6N2E2_4399 0.40 -0.6
5,129,300 + Pf6N2E2_4399 0.40 -0.4
5,129,300 + Pf6N2E2_4399 0.40 +0.6
5,129,300 + Pf6N2E2_4399 0.40 +0.5
5,129,301 - Pf6N2E2_4399 0.40 +0.5
5,129,325 + Pf6N2E2_4399 0.42 +0.4
5,129,326 - Pf6N2E2_4399 0.42 +1.8
5,129,468 + Pf6N2E2_4399 0.50 +0.7
5,129,468 + Pf6N2E2_4399 0.50 -0.1
5,129,468 + Pf6N2E2_4399 0.50 +1.4
5,129,469 - Pf6N2E2_4399 0.50 +0.0
5,129,469 - Pf6N2E2_4399 0.50 +0.1
5,129,469 - Pf6N2E2_4399 0.50 +1.2
5,129,469 - Pf6N2E2_4399 0.50 +2.6
5,129,565 + Pf6N2E2_4399 0.56 -0.4
5,129,620 + Pf6N2E2_4399 0.59 +0.3
5,129,620 + Pf6N2E2_4399 0.59 -0.1
5,129,710 - Pf6N2E2_4399 0.65 -0.6
5,130,178 + -0.1
5,130,252 + +1.3
5,130,252 + -0.1
5,130,252 + -0.1
5,130,252 + +1.0
5,130,252 + +0.1
5,130,252 + +0.6
5,130,252 + +0.0
5,130,252 + +0.8
5,130,253 - +0.1
5,130,253 - +0.3
5,130,253 - +1.1
5,130,253 - +1.2
5,130,253 - +3.1
5,130,253 - +0.1
5,130,544 + Pf6N2E2_4400 0.14 +0.1
5,130,545 - Pf6N2E2_4400 0.14 +1.0
5,130,836 - Pf6N2E2_4400 0.35 +0.4
5,130,836 - Pf6N2E2_4400 0.35 +0.3
5,130,865 + Pf6N2E2_4400 0.37 +0.3
5,130,866 - Pf6N2E2_4400 0.37 +0.7
5,130,997 + Pf6N2E2_4400 0.46 +0.1
5,130,997 + Pf6N2E2_4400 0.46 -0.4
5,130,997 + Pf6N2E2_4400 0.46 +0.8
5,130,998 - Pf6N2E2_4400 0.46 +0.7
5,130,998 - Pf6N2E2_4400 0.46 +0.2
5,131,091 - Pf6N2E2_4400 0.53 -0.9
5,131,109 + Pf6N2E2_4400 0.54 +0.1
5,131,110 - Pf6N2E2_4400 0.54 +0.7
5,131,110 - Pf6N2E2_4400 0.54 +0.7
5,131,216 + Pf6N2E2_4400 0.62 +0.2
5,131,216 + Pf6N2E2_4400 0.62 +0.5
5,131,216 + Pf6N2E2_4400 0.62 +1.3
5,131,216 + Pf6N2E2_4400 0.62 +0.9
5,131,217 - Pf6N2E2_4400 0.62 +0.1

Or see this region's nucleotide sequence