Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3006

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3005 and Pf6N2E2_3006 are separated by 3 nucleotidesPf6N2E2_3006 and Pf6N2E2_3007 overlap by 14 nucleotides Pf6N2E2_3005 - FIG003269: Prophage tail protein, at 3,494,044 to 3,495,084 _3005 Pf6N2E2_3006 - Phage tail/DNA circulation protein, at 3,495,088 to 3,496,326 _3006 Pf6N2E2_3007 - Phage tail length tape-measure protein, at 3,496,313 to 3,497,887 _3007 Position (kb) 3495 3496 3497Strain fitness (log2 ratio) -1 0 1 2at 3494.132 kb on + strandat 3494.132 kb on + strandat 3494.132 kb on + strandat 3494.191 kb on + strand, within Pf6N2E2_3005at 3494.249 kb on + strand, within Pf6N2E2_3005at 3494.474 kb on + strand, within Pf6N2E2_3005at 3494.846 kb on + strand, within Pf6N2E2_3005at 3494.846 kb on + strand, within Pf6N2E2_3005at 3494.847 kb on - strand, within Pf6N2E2_3005at 3494.847 kb on - strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.866 kb on + strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.867 kb on - strand, within Pf6N2E2_3005at 3494.870 kb on + strand, within Pf6N2E2_3005at 3494.871 kb on - strand, within Pf6N2E2_3005at 3494.871 kb on - strand, within Pf6N2E2_3005at 3494.871 kb on - strand, within Pf6N2E2_3005at 3495.054 kb on + strandat 3495.054 kb on + strandat 3495.054 kb on + strandat 3495.055 kb on - strandat 3495.055 kb on - strandat 3495.090 kb on - strandat 3495.194 kb on + strandat 3495.195 kb on - strandat 3495.315 kb on - strand, within Pf6N2E2_3006at 3495.529 kb on + strand, within Pf6N2E2_3006at 3495.765 kb on - strand, within Pf6N2E2_3006at 3495.807 kb on - strand, within Pf6N2E2_3006at 3495.807 kb on - strand, within Pf6N2E2_3006at 3495.980 kb on + strand, within Pf6N2E2_3006at 3496.520 kb on - strand, within Pf6N2E2_3007at 3496.520 kb on - strand, within Pf6N2E2_3007at 3497.198 kb on - strand, within Pf6N2E2_3007

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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3,494,132 + +0.9
3,494,132 + -0.5
3,494,132 + +0.8
3,494,191 + Pf6N2E2_3005 0.14 +0.1
3,494,249 + Pf6N2E2_3005 0.20 -0.5
3,494,474 + Pf6N2E2_3005 0.41 -0.4
3,494,846 + Pf6N2E2_3005 0.77 +0.0
3,494,846 + Pf6N2E2_3005 0.77 -0.4
3,494,847 - Pf6N2E2_3005 0.77 +0.1
3,494,847 - Pf6N2E2_3005 0.77 -1.1
3,494,866 + Pf6N2E2_3005 0.79 -0.0
3,494,866 + Pf6N2E2_3005 0.79 +0.5
3,494,866 + Pf6N2E2_3005 0.79 +0.7
3,494,866 + Pf6N2E2_3005 0.79 +0.3
3,494,866 + Pf6N2E2_3005 0.79 +0.6
3,494,866 + Pf6N2E2_3005 0.79 +0.5
3,494,866 + Pf6N2E2_3005 0.79 -0.0
3,494,866 + Pf6N2E2_3005 0.79 +0.5
3,494,866 + Pf6N2E2_3005 0.79 +0.0
3,494,866 + Pf6N2E2_3005 0.79 +0.2
3,494,866 + Pf6N2E2_3005 0.79 +0.0
3,494,866 + Pf6N2E2_3005 0.79 +0.0
3,494,866 + Pf6N2E2_3005 0.79 +0.0
3,494,866 + Pf6N2E2_3005 0.79 -0.5
3,494,866 + Pf6N2E2_3005 0.79 +0.5
3,494,866 + Pf6N2E2_3005 0.79 -0.1
3,494,866 + Pf6N2E2_3005 0.79 +0.2
3,494,866 + Pf6N2E2_3005 0.79 -0.1
3,494,866 + Pf6N2E2_3005 0.79 -0.5
3,494,867 - Pf6N2E2_3005 0.79 -0.7
3,494,867 - Pf6N2E2_3005 0.79 +0.1
3,494,867 - Pf6N2E2_3005 0.79 +0.7
3,494,867 - Pf6N2E2_3005 0.79 +0.3
3,494,867 - Pf6N2E2_3005 0.79 +0.5
3,494,867 - Pf6N2E2_3005 0.79 -0.2
3,494,867 - Pf6N2E2_3005 0.79 -0.6
3,494,867 - Pf6N2E2_3005 0.79 +0.7
3,494,867 - Pf6N2E2_3005 0.79 -0.1
3,494,867 - Pf6N2E2_3005 0.79 +0.1
3,494,867 - Pf6N2E2_3005 0.79 -1.0
3,494,867 - Pf6N2E2_3005 0.79 +0.5
3,494,867 - Pf6N2E2_3005 0.79 +0.1
3,494,867 - Pf6N2E2_3005 0.79 -0.2
3,494,867 - Pf6N2E2_3005 0.79 -0.4
3,494,867 - Pf6N2E2_3005 0.79 +0.5
3,494,867 - Pf6N2E2_3005 0.79 -0.1
3,494,867 - Pf6N2E2_3005 0.79 +0.1
3,494,867 - Pf6N2E2_3005 0.79 +1.6
3,494,867 - Pf6N2E2_3005 0.79 +2.2
3,494,867 - Pf6N2E2_3005 0.79 +0.1
3,494,867 - Pf6N2E2_3005 0.79 +0.1
3,494,867 - Pf6N2E2_3005 0.79 -0.6
3,494,870 + Pf6N2E2_3005 0.79 -0.4
3,494,871 - Pf6N2E2_3005 0.79 -1.2
3,494,871 - Pf6N2E2_3005 0.79 +0.4
3,494,871 - Pf6N2E2_3005 0.79 +0.6
3,495,054 + -0.3
3,495,054 + +0.6
3,495,054 + +1.0
3,495,055 - +0.0
3,495,055 - +0.3
3,495,090 - +0.6
3,495,194 + +0.2
3,495,195 - -0.6
3,495,315 - Pf6N2E2_3006 0.18 -0.2
3,495,529 + Pf6N2E2_3006 0.36 -0.3
3,495,765 - Pf6N2E2_3006 0.55 -0.9
3,495,807 - Pf6N2E2_3006 0.58 -0.0
3,495,807 - Pf6N2E2_3006 0.58 -0.3
3,495,980 + Pf6N2E2_3006 0.72 -0.7
3,496,520 - Pf6N2E2_3007 0.13 -0.3
3,496,520 - Pf6N2E2_3007 0.13 +0.3
3,497,198 - Pf6N2E2_3007 0.56 -1.4

Or see this region's nucleotide sequence