Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1895

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1894 and Pf6N2E2_1895 are separated by 902 nucleotidesPf6N2E2_1895 and Pf6N2E2_1896 are separated by 212 nucleotidesPf6N2E2_1896 and Pf6N2E2_1897 are separated by 79 nucleotidesPf6N2E2_1897 and Pf6N2E2_1898 overlap by 4 nucleotides Pf6N2E2_1894 - hypothetical protein, at 2,244,799 to 2,244,930 _1894 Pf6N2E2_1895 - PQQ-dependent oxidoreductase, gdhB family, at 2,245,833 to 2,246,951 _1895 Pf6N2E2_1896 - hypothetical protein, at 2,247,164 to 2,247,286 _1896 Pf6N2E2_1897 - Cytochrome B561, at 2,247,366 to 2,247,944 _1897 Pf6N2E2_1898 - Catalase (EC 1.11.1.6), at 2,247,941 to 2,249,023 _1898 Position (kb) 2245 2246 2247Strain fitness (log2 ratio) -3 -2 -1 0 1at 2244.861 kb on + strand, within Pf6N2E2_1894at 2244.895 kb on + strand, within Pf6N2E2_1894at 2244.900 kb on + strand, within Pf6N2E2_1894at 2244.900 kb on + strand, within Pf6N2E2_1894at 2244.907 kb on + strand, within Pf6N2E2_1894at 2244.907 kb on + strand, within Pf6N2E2_1894at 2244.908 kb on - strand, within Pf6N2E2_1894at 2244.908 kb on - strand, within Pf6N2E2_1894at 2244.908 kb on - strand, within Pf6N2E2_1894at 2244.918 kb on + strandat 2244.919 kb on - strandat 2244.919 kb on - strandat 2244.953 kb on + strandat 2244.953 kb on + strandat 2244.963 kb on + strandat 2244.963 kb on + strandat 2244.964 kb on - strandat 2244.967 kb on + strandat 2244.967 kb on + strandat 2245.032 kb on + strandat 2245.032 kb on + strandat 2245.033 kb on - strandat 2245.033 kb on - strandat 2245.058 kb on + strandat 2245.058 kb on + strandat 2245.059 kb on - strandat 2245.092 kb on - strandat 2245.189 kb on + strandat 2245.252 kb on + strandat 2245.421 kb on - strandat 2245.459 kb on + strandat 2245.459 kb on + strandat 2245.495 kb on - strandat 2245.516 kb on - strandat 2245.518 kb on + strandat 2245.564 kb on + strandat 2245.564 kb on + strandat 2245.565 kb on - strandat 2245.565 kb on - strandat 2245.565 kb on - strandat 2245.569 kb on - strandat 2245.885 kb on + strandat 2245.885 kb on + strandat 2245.885 kb on + strandat 2245.886 kb on - strandat 2245.886 kb on - strandat 2245.886 kb on - strandat 2245.886 kb on - strandat 2245.886 kb on - strandat 2246.101 kb on + strand, within Pf6N2E2_1895at 2246.176 kb on + strand, within Pf6N2E2_1895at 2246.181 kb on + strand, within Pf6N2E2_1895at 2246.197 kb on + strand, within Pf6N2E2_1895at 2246.197 kb on + strand, within Pf6N2E2_1895at 2246.198 kb on - strand, within Pf6N2E2_1895at 2246.311 kb on + strand, within Pf6N2E2_1895at 2246.444 kb on - strand, within Pf6N2E2_1895at 2246.606 kb on + strand, within Pf6N2E2_1895at 2246.606 kb on + strand, within Pf6N2E2_1895at 2246.648 kb on - strand, within Pf6N2E2_1895at 2246.992 kb on + strandat 2247.005 kb on - strandat 2247.005 kb on - strandat 2247.014 kb on + strandat 2247.014 kb on + strandat 2247.028 kb on - strandat 2247.151 kb on + strandat 2247.152 kb on - strandat 2247.204 kb on - strand, within Pf6N2E2_1896at 2247.204 kb on - strand, within Pf6N2E2_1896at 2247.204 kb on - strand, within Pf6N2E2_1896at 2247.289 kb on + strandat 2247.290 kb on - strandat 2247.290 kb on - strandat 2247.305 kb on + strandat 2247.524 kb on + strand, within Pf6N2E2_1897at 2247.524 kb on + strand, within Pf6N2E2_1897at 2247.524 kb on + strand, within Pf6N2E2_1897at 2247.524 kb on + strand, within Pf6N2E2_1897at 2247.525 kb on - strand, within Pf6N2E2_1897at 2247.664 kb on + strand, within Pf6N2E2_1897at 2247.664 kb on + strand, within Pf6N2E2_1897at 2247.664 kb on + strand, within Pf6N2E2_1897at 2247.665 kb on - strand, within Pf6N2E2_1897at 2247.665 kb on - strand, within Pf6N2E2_1897at 2247.665 kb on - strand, within Pf6N2E2_1897at 2247.824 kb on - strand, within Pf6N2E2_1897at 2247.824 kb on - strand, within Pf6N2E2_1897

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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2,244,861 + Pf6N2E2_1894 0.47 -0.4
2,244,895 + Pf6N2E2_1894 0.73 +0.5
2,244,900 + Pf6N2E2_1894 0.77 -0.5
2,244,900 + Pf6N2E2_1894 0.77 -0.1
2,244,907 + Pf6N2E2_1894 0.82 -0.8
2,244,907 + Pf6N2E2_1894 0.82 -0.6
2,244,908 - Pf6N2E2_1894 0.83 -0.1
2,244,908 - Pf6N2E2_1894 0.83 +0.7
2,244,908 - Pf6N2E2_1894 0.83 +0.1
2,244,918 + -0.0
2,244,919 - -0.1
2,244,919 - -0.5
2,244,953 + +1.1
2,244,953 + -0.7
2,244,963 + -0.1
2,244,963 + -0.6
2,244,964 - -0.1
2,244,967 + +0.9
2,244,967 + +0.2
2,245,032 + +0.8
2,245,032 + +0.3
2,245,033 - -1.5
2,245,033 - +0.9
2,245,058 + -0.9
2,245,058 + +0.6
2,245,059 - +0.8
2,245,092 - +0.6
2,245,189 + +0.3
2,245,252 + -0.5
2,245,421 - +0.2
2,245,459 + -0.5
2,245,459 + -0.9
2,245,495 - +0.4
2,245,516 - -0.1
2,245,518 + +0.6
2,245,564 + -2.9
2,245,564 + -0.5
2,245,565 - +0.9
2,245,565 - -0.2
2,245,565 - +1.0
2,245,569 - +0.3
2,245,885 + -0.2
2,245,885 + +0.2
2,245,885 + -1.1
2,245,886 - +1.5
2,245,886 - +0.2
2,245,886 - +0.1
2,245,886 - -0.8
2,245,886 - -0.7
2,246,101 + Pf6N2E2_1895 0.24 -0.7
2,246,176 + Pf6N2E2_1895 0.31 +0.1
2,246,181 + Pf6N2E2_1895 0.31 -0.3
2,246,197 + Pf6N2E2_1895 0.33 -1.2
2,246,197 + Pf6N2E2_1895 0.33 -0.2
2,246,198 - Pf6N2E2_1895 0.33 -0.3
2,246,311 + Pf6N2E2_1895 0.43 -0.8
2,246,444 - Pf6N2E2_1895 0.55 -0.2
2,246,606 + Pf6N2E2_1895 0.69 -0.5
2,246,606 + Pf6N2E2_1895 0.69 +0.0
2,246,648 - Pf6N2E2_1895 0.73 +0.0
2,246,992 + +0.2
2,247,005 - +0.6
2,247,005 - -1.5
2,247,014 + -0.1
2,247,014 + -0.0
2,247,028 - -0.3
2,247,151 + -0.1
2,247,152 - +0.6
2,247,204 - Pf6N2E2_1896 0.33 +1.5
2,247,204 - Pf6N2E2_1896 0.33 +0.4
2,247,204 - Pf6N2E2_1896 0.33 -0.2
2,247,289 + -0.1
2,247,290 - +0.0
2,247,290 - +1.1
2,247,305 + -0.6
2,247,524 + Pf6N2E2_1897 0.27 +1.2
2,247,524 + Pf6N2E2_1897 0.27 +0.3
2,247,524 + Pf6N2E2_1897 0.27 -0.1
2,247,524 + Pf6N2E2_1897 0.27 -0.3
2,247,525 - Pf6N2E2_1897 0.27 -0.8
2,247,664 + Pf6N2E2_1897 0.51 -0.2
2,247,664 + Pf6N2E2_1897 0.51 -0.3
2,247,664 + Pf6N2E2_1897 0.51 +0.6
2,247,665 - Pf6N2E2_1897 0.52 -0.5
2,247,665 - Pf6N2E2_1897 0.52 +0.5
2,247,665 - Pf6N2E2_1897 0.52 +0.2
2,247,824 - Pf6N2E2_1897 0.79 +0.2
2,247,824 - Pf6N2E2_1897 0.79 -0.2

Or see this region's nucleotide sequence