Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1894 and Pf6N2E2_1895 are separated by 902 nucleotides Pf6N2E2_1895 and Pf6N2E2_1896 are separated by 212 nucleotides Pf6N2E2_1896 and Pf6N2E2_1897 are separated by 79 nucleotides Pf6N2E2_1897 and Pf6N2E2_1898 overlap by 4 nucleotides
Pf6N2E2_1894 - hypothetical protein, at 2,244,799 to 2,244,930
_1894
Pf6N2E2_1895 - PQQ-dependent oxidoreductase, gdhB family, at 2,245,833 to 2,246,951
_1895
Pf6N2E2_1896 - hypothetical protein, at 2,247,164 to 2,247,286
_1896
Pf6N2E2_1897 - Cytochrome B561, at 2,247,366 to 2,247,944
_1897
Pf6N2E2_1898 - Catalase (EC 1.11.1.6), at 2,247,941 to 2,249,023
_1898
Position (kb)
2245
2246
2247 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2244.861 kb on + strand, within Pf6N2E2_1894 at 2244.895 kb on + strand, within Pf6N2E2_1894 at 2244.900 kb on + strand, within Pf6N2E2_1894 at 2244.900 kb on + strand, within Pf6N2E2_1894 at 2244.907 kb on + strand, within Pf6N2E2_1894 at 2244.907 kb on + strand, within Pf6N2E2_1894 at 2244.908 kb on - strand, within Pf6N2E2_1894 at 2244.908 kb on - strand, within Pf6N2E2_1894 at 2244.908 kb on - strand, within Pf6N2E2_1894 at 2244.918 kb on + strand at 2244.919 kb on - strand at 2244.919 kb on - strand at 2244.953 kb on + strand at 2244.953 kb on + strand at 2244.963 kb on + strand at 2244.963 kb on + strand at 2244.964 kb on - strand at 2244.967 kb on + strand at 2244.967 kb on + strand at 2245.032 kb on + strand at 2245.032 kb on + strand at 2245.033 kb on - strand at 2245.033 kb on - strand at 2245.058 kb on + strand at 2245.058 kb on + strand at 2245.059 kb on - strand at 2245.092 kb on - strand at 2245.189 kb on + strand at 2245.252 kb on + strand at 2245.421 kb on - strand at 2245.459 kb on + strand at 2245.459 kb on + strand at 2245.495 kb on - strand at 2245.516 kb on - strand at 2245.518 kb on + strand at 2245.564 kb on + strand at 2245.564 kb on + strand at 2245.565 kb on - strand at 2245.565 kb on - strand at 2245.565 kb on - strand at 2245.569 kb on - strand at 2245.885 kb on + strand at 2245.885 kb on + strand at 2245.885 kb on + strand at 2245.886 kb on - strand at 2245.886 kb on - strand at 2245.886 kb on - strand at 2245.886 kb on - strand at 2245.886 kb on - strand at 2246.101 kb on + strand, within Pf6N2E2_1895 at 2246.176 kb on + strand, within Pf6N2E2_1895 at 2246.181 kb on + strand, within Pf6N2E2_1895 at 2246.197 kb on + strand, within Pf6N2E2_1895 at 2246.197 kb on + strand, within Pf6N2E2_1895 at 2246.198 kb on - strand, within Pf6N2E2_1895 at 2246.311 kb on + strand, within Pf6N2E2_1895 at 2246.444 kb on - strand, within Pf6N2E2_1895 at 2246.606 kb on + strand, within Pf6N2E2_1895 at 2246.606 kb on + strand, within Pf6N2E2_1895 at 2246.648 kb on - strand, within Pf6N2E2_1895 at 2246.992 kb on + strand at 2247.005 kb on - strand at 2247.005 kb on - strand at 2247.014 kb on + strand at 2247.014 kb on + strand at 2247.028 kb on - strand at 2247.151 kb on + strand at 2247.152 kb on - strand at 2247.204 kb on - strand, within Pf6N2E2_1896 at 2247.204 kb on - strand, within Pf6N2E2_1896 at 2247.204 kb on - strand, within Pf6N2E2_1896 at 2247.289 kb on + strand at 2247.290 kb on - strand at 2247.290 kb on - strand at 2247.305 kb on + strand at 2247.524 kb on + strand, within Pf6N2E2_1897 at 2247.524 kb on + strand, within Pf6N2E2_1897 at 2247.524 kb on + strand, within Pf6N2E2_1897 at 2247.524 kb on + strand, within Pf6N2E2_1897 at 2247.525 kb on - strand, within Pf6N2E2_1897 at 2247.664 kb on + strand, within Pf6N2E2_1897 at 2247.664 kb on + strand, within Pf6N2E2_1897 at 2247.664 kb on + strand, within Pf6N2E2_1897 at 2247.665 kb on - strand, within Pf6N2E2_1897 at 2247.665 kb on - strand, within Pf6N2E2_1897 at 2247.665 kb on - strand, within Pf6N2E2_1897 at 2247.824 kb on - strand, within Pf6N2E2_1897 at 2247.824 kb on - strand, within Pf6N2E2_1897
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 2,244,861 + Pf6N2E2_1894 0.47 -0.4 2,244,895 + Pf6N2E2_1894 0.73 +0.5 2,244,900 + Pf6N2E2_1894 0.77 -0.5 2,244,900 + Pf6N2E2_1894 0.77 -0.1 2,244,907 + Pf6N2E2_1894 0.82 -0.8 2,244,907 + Pf6N2E2_1894 0.82 -0.6 2,244,908 - Pf6N2E2_1894 0.83 -0.1 2,244,908 - Pf6N2E2_1894 0.83 +0.7 2,244,908 - Pf6N2E2_1894 0.83 +0.1 2,244,918 + -0.0 2,244,919 - -0.1 2,244,919 - -0.5 2,244,953 + +1.1 2,244,953 + -0.7 2,244,963 + -0.1 2,244,963 + -0.6 2,244,964 - -0.1 2,244,967 + +0.9 2,244,967 + +0.2 2,245,032 + +0.8 2,245,032 + +0.3 2,245,033 - -1.5 2,245,033 - +0.9 2,245,058 + -0.9 2,245,058 + +0.6 2,245,059 - +0.8 2,245,092 - +0.6 2,245,189 + +0.3 2,245,252 + -0.5 2,245,421 - +0.2 2,245,459 + -0.5 2,245,459 + -0.9 2,245,495 - +0.4 2,245,516 - -0.1 2,245,518 + +0.6 2,245,564 + -2.9 2,245,564 + -0.5 2,245,565 - +0.9 2,245,565 - -0.2 2,245,565 - +1.0 2,245,569 - +0.3 2,245,885 + -0.2 2,245,885 + +0.2 2,245,885 + -1.1 2,245,886 - +1.5 2,245,886 - +0.2 2,245,886 - +0.1 2,245,886 - -0.8 2,245,886 - -0.7 2,246,101 + Pf6N2E2_1895 0.24 -0.7 2,246,176 + Pf6N2E2_1895 0.31 +0.1 2,246,181 + Pf6N2E2_1895 0.31 -0.3 2,246,197 + Pf6N2E2_1895 0.33 -1.2 2,246,197 + Pf6N2E2_1895 0.33 -0.2 2,246,198 - Pf6N2E2_1895 0.33 -0.3 2,246,311 + Pf6N2E2_1895 0.43 -0.8 2,246,444 - Pf6N2E2_1895 0.55 -0.2 2,246,606 + Pf6N2E2_1895 0.69 -0.5 2,246,606 + Pf6N2E2_1895 0.69 +0.0 2,246,648 - Pf6N2E2_1895 0.73 +0.0 2,246,992 + +0.2 2,247,005 - +0.6 2,247,005 - -1.5 2,247,014 + -0.1 2,247,014 + -0.0 2,247,028 - -0.3 2,247,151 + -0.1 2,247,152 - +0.6 2,247,204 - Pf6N2E2_1896 0.33 +1.5 2,247,204 - Pf6N2E2_1896 0.33 +0.4 2,247,204 - Pf6N2E2_1896 0.33 -0.2 2,247,289 + -0.1 2,247,290 - +0.0 2,247,290 - +1.1 2,247,305 + -0.6 2,247,524 + Pf6N2E2_1897 0.27 +1.2 2,247,524 + Pf6N2E2_1897 0.27 +0.3 2,247,524 + Pf6N2E2_1897 0.27 -0.1 2,247,524 + Pf6N2E2_1897 0.27 -0.3 2,247,525 - Pf6N2E2_1897 0.27 -0.8 2,247,664 + Pf6N2E2_1897 0.51 -0.2 2,247,664 + Pf6N2E2_1897 0.51 -0.3 2,247,664 + Pf6N2E2_1897 0.51 +0.6 2,247,665 - Pf6N2E2_1897 0.52 -0.5 2,247,665 - Pf6N2E2_1897 0.52 +0.5 2,247,665 - Pf6N2E2_1897 0.52 +0.2 2,247,824 - Pf6N2E2_1897 0.79 +0.2 2,247,824 - Pf6N2E2_1897 0.79 -0.2
Or see this region's nucleotide sequence