Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1840

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1838 and Pf6N2E2_1839 overlap by 1 nucleotidesPf6N2E2_1839 and Pf6N2E2_1840 overlap by 4 nucleotidesPf6N2E2_1840 and Pf6N2E2_1841 are separated by 10 nucleotidesPf6N2E2_1841 and Pf6N2E2_1842 are separated by 179 nucleotides Pf6N2E2_1838 - 6-hexanolactone hydrolase, at 2,176,918 to 2,177,823 _1838 Pf6N2E2_1839 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-), at 2,177,823 to 2,178,557 _1839 Pf6N2E2_1840 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,178,554 to 2,179,366 _1840 Pf6N2E2_1841 - hypothetical protein, at 2,179,377 to 2,179,526 _1841 Pf6N2E2_1842 - Transcriptional regulator, TetR family, at 2,179,706 to 2,180,350 _1842 Position (kb) 2178 2179 2180Strain fitness (log2 ratio) -1 0 1at 2177.603 kb on + strand, within Pf6N2E2_1838at 2177.792 kb on - strandat 2178.115 kb on + strand, within Pf6N2E2_1839at 2178.225 kb on + strand, within Pf6N2E2_1839at 2178.254 kb on - strand, within Pf6N2E2_1839at 2178.254 kb on - strand, within Pf6N2E2_1839at 2178.302 kb on - strand, within Pf6N2E2_1839at 2178.435 kb on - strand, within Pf6N2E2_1839at 2178.500 kb on + strandat 2178.707 kb on - strand, within Pf6N2E2_1840at 2179.087 kb on - strand, within Pf6N2E2_1840at 2179.087 kb on - strand, within Pf6N2E2_1840at 2179.105 kb on + strand, within Pf6N2E2_1840at 2179.107 kb on + strand, within Pf6N2E2_1840at 2179.108 kb on - strand, within Pf6N2E2_1840at 2179.108 kb on - strand, within Pf6N2E2_1840at 2179.141 kb on + strand, within Pf6N2E2_1840at 2179.141 kb on + strand, within Pf6N2E2_1840at 2179.142 kb on - strand, within Pf6N2E2_1840at 2179.560 kb on + strandat 2179.566 kb on - strandat 2179.744 kb on + strandat 2179.773 kb on + strand, within Pf6N2E2_1842at 2179.773 kb on + strand, within Pf6N2E2_1842at 2179.774 kb on - strand, within Pf6N2E2_1842at 2179.774 kb on - strand, within Pf6N2E2_1842at 2179.996 kb on - strand, within Pf6N2E2_1842at 2180.171 kb on - strand, within Pf6N2E2_1842at 2180.171 kb on - strand, within Pf6N2E2_1842at 2180.178 kb on - strand, within Pf6N2E2_1842at 2180.224 kb on + strand, within Pf6N2E2_1842at 2180.224 kb on + strand, within Pf6N2E2_1842at 2180.225 kb on - strand, within Pf6N2E2_1842at 2180.225 kb on - strand, within Pf6N2E2_1842at 2180.241 kb on + strand, within Pf6N2E2_1842at 2180.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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2,177,603 + Pf6N2E2_1838 0.76 +0.9
2,177,792 - +1.3
2,178,115 + Pf6N2E2_1839 0.40 +0.5
2,178,225 + Pf6N2E2_1839 0.55 -0.7
2,178,254 - Pf6N2E2_1839 0.59 -0.3
2,178,254 - Pf6N2E2_1839 0.59 +0.4
2,178,302 - Pf6N2E2_1839 0.65 -0.2
2,178,435 - Pf6N2E2_1839 0.83 +1.0
2,178,500 + -0.1
2,178,707 - Pf6N2E2_1840 0.19 -0.7
2,179,087 - Pf6N2E2_1840 0.66 +0.6
2,179,087 - Pf6N2E2_1840 0.66 -0.9
2,179,105 + Pf6N2E2_1840 0.68 -0.4
2,179,107 + Pf6N2E2_1840 0.68 +1.1
2,179,108 - Pf6N2E2_1840 0.68 -0.3
2,179,108 - Pf6N2E2_1840 0.68 -0.5
2,179,141 + Pf6N2E2_1840 0.72 -0.2
2,179,141 + Pf6N2E2_1840 0.72 -1.3
2,179,142 - Pf6N2E2_1840 0.72 +0.1
2,179,560 + +0.5
2,179,566 - +0.1
2,179,744 + +0.1
2,179,773 + Pf6N2E2_1842 0.10 +0.4
2,179,773 + Pf6N2E2_1842 0.10 +0.1
2,179,774 - Pf6N2E2_1842 0.11 -0.8
2,179,774 - Pf6N2E2_1842 0.11 -0.4
2,179,996 - Pf6N2E2_1842 0.45 +0.3
2,180,171 - Pf6N2E2_1842 0.72 +0.6
2,180,171 - Pf6N2E2_1842 0.72 +0.4
2,180,178 - Pf6N2E2_1842 0.73 -0.5
2,180,224 + Pf6N2E2_1842 0.80 +0.4
2,180,224 + Pf6N2E2_1842 0.80 -0.3
2,180,225 - Pf6N2E2_1842 0.80 -0.1
2,180,225 - Pf6N2E2_1842 0.80 +0.1
2,180,241 + Pf6N2E2_1842 0.83 -1.0
2,180,360 - +0.4

Or see this region's nucleotide sequence