Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1209

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1208 and Pf6N2E2_1209 are separated by 37 nucleotidesPf6N2E2_1209 and Pf6N2E2_1210 are separated by 345 nucleotides Pf6N2E2_1208 - Epoxide hydrolase (EC 3.3.2.9), at 1,414,858 to 1,416,228 _1208 Pf6N2E2_1209 - hypothetical protein, at 1,416,266 to 1,416,523 _1209 Pf6N2E2_1210 - putative aminotransferase, at 1,416,869 to 1,418,017 _1210 Position (kb) 1416 1417Strain fitness (log2 ratio) -1 0 1at 1415.381 kb on + strand, within Pf6N2E2_1208at 1415.561 kb on + strand, within Pf6N2E2_1208at 1415.562 kb on - strand, within Pf6N2E2_1208at 1415.562 kb on - strand, within Pf6N2E2_1208at 1415.562 kb on - strand, within Pf6N2E2_1208at 1415.562 kb on - strand, within Pf6N2E2_1208at 1415.906 kb on + strand, within Pf6N2E2_1208at 1415.921 kb on + strand, within Pf6N2E2_1208at 1415.921 kb on + strand, within Pf6N2E2_1208at 1415.921 kb on + strandat 1415.922 kb on - strand, within Pf6N2E2_1208at 1415.938 kb on + strand, within Pf6N2E2_1208at 1416.303 kb on + strand, within Pf6N2E2_1209at 1416.304 kb on - strand, within Pf6N2E2_1209at 1416.304 kb on - strand, within Pf6N2E2_1209at 1416.339 kb on + strand, within Pf6N2E2_1209at 1416.421 kb on - strand, within Pf6N2E2_1209at 1416.426 kb on + strand, within Pf6N2E2_1209at 1416.426 kb on + strand, within Pf6N2E2_1209at 1416.426 kb on + strand, within Pf6N2E2_1209at 1416.426 kb on + strand, within Pf6N2E2_1209at 1416.426 kb on + strand, within Pf6N2E2_1209at 1416.427 kb on - strand, within Pf6N2E2_1209at 1416.427 kb on - strand, within Pf6N2E2_1209at 1416.427 kb on - strand, within Pf6N2E2_1209at 1416.529 kb on + strandat 1416.530 kb on - strandat 1416.530 kb on - strandat 1416.530 kb on - strandat 1416.662 kb on - strandat 1416.662 kb on - strandat 1416.672 kb on - strandat 1416.672 kb on - strandat 1416.672 kb on - strandat 1416.672 kb on - strandat 1416.779 kb on - strandat 1417.094 kb on + strand, within Pf6N2E2_1210at 1417.485 kb on + strand, within Pf6N2E2_1210at 1417.485 kb on + strand, within Pf6N2E2_1210at 1417.485 kb on + strand, within Pf6N2E2_1210at 1417.485 kb on + strand, within Pf6N2E2_1210at 1417.485 kb on + strand, within Pf6N2E2_1210at 1417.486 kb on - strand, within Pf6N2E2_1210

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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1,415,381 + Pf6N2E2_1208 0.38 +0.7
1,415,561 + Pf6N2E2_1208 0.51 -0.2
1,415,562 - Pf6N2E2_1208 0.51 +0.5
1,415,562 - Pf6N2E2_1208 0.51 -0.2
1,415,562 - Pf6N2E2_1208 0.51 -0.3
1,415,562 - Pf6N2E2_1208 0.51 +0.1
1,415,906 + Pf6N2E2_1208 0.76 +1.6
1,415,921 + Pf6N2E2_1208 0.78 -0.4
1,415,921 + Pf6N2E2_1208 0.78 +1.4
1,415,921 + -1.6
1,415,922 - Pf6N2E2_1208 0.78 -0.2
1,415,938 + Pf6N2E2_1208 0.79 +0.3
1,416,303 + Pf6N2E2_1209 0.14 +0.7
1,416,304 - Pf6N2E2_1209 0.15 +1.5
1,416,304 - Pf6N2E2_1209 0.15 +0.5
1,416,339 + Pf6N2E2_1209 0.28 +0.7
1,416,421 - Pf6N2E2_1209 0.60 +0.5
1,416,426 + Pf6N2E2_1209 0.62 -1.0
1,416,426 + Pf6N2E2_1209 0.62 +0.2
1,416,426 + Pf6N2E2_1209 0.62 +0.2
1,416,426 + Pf6N2E2_1209 0.62 +0.2
1,416,426 + Pf6N2E2_1209 0.62 +0.7
1,416,427 - Pf6N2E2_1209 0.62 +0.2
1,416,427 - Pf6N2E2_1209 0.62 +0.5
1,416,427 - Pf6N2E2_1209 0.62 +0.6
1,416,529 + +0.9
1,416,530 - -0.0
1,416,530 - +0.0
1,416,530 - +1.4
1,416,662 - -0.2
1,416,662 - -0.3
1,416,672 - -0.4
1,416,672 - +0.8
1,416,672 - +0.6
1,416,672 - +0.2
1,416,779 - +0.4
1,417,094 + Pf6N2E2_1210 0.20 +0.9
1,417,485 + Pf6N2E2_1210 0.54 -0.7
1,417,485 + Pf6N2E2_1210 0.54 -1.0
1,417,485 + Pf6N2E2_1210 0.54 +1.3
1,417,485 + Pf6N2E2_1210 0.54 +0.3
1,417,485 + Pf6N2E2_1210 0.54 +0.0
1,417,486 - Pf6N2E2_1210 0.54 +0.1

Or see this region's nucleotide sequence