Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1125 and Pf6N2E2_1126 are separated by 32 nucleotides Pf6N2E2_1126 and Pf6N2E2_1127 overlap by 4 nucleotides
Pf6N2E2_1125 - Transcriptional regulator, AraC family, at 1,320,921 to 1,321,817
_1125
Pf6N2E2_1126 - Two-component system regulatory protein, at 1,321,850 to 1,322,317
_1126
Pf6N2E2_1127 - Sensory box histidine kinase/response regulator, at 1,322,314 to 1,324,632
_1127
Position (kb)
1321
1322
1323 Strain fitness (log2 ratio)
-1
0
1
2 at 1320.895 kb on - strand at 1320.922 kb on + strand at 1320.922 kb on + strand at 1320.922 kb on + strand at 1320.923 kb on - strand at 1321.081 kb on + strand, within Pf6N2E2_1125 at 1321.081 kb on + strand, within Pf6N2E2_1125 at 1321.082 kb on - strand, within Pf6N2E2_1125 at 1321.082 kb on - strand, within Pf6N2E2_1125 at 1321.132 kb on + strand, within Pf6N2E2_1125 at 1321.143 kb on - strand, within Pf6N2E2_1125 at 1321.241 kb on + strand, within Pf6N2E2_1125 at 1321.242 kb on - strand, within Pf6N2E2_1125 at 1321.300 kb on - strand, within Pf6N2E2_1125 at 1321.484 kb on - strand, within Pf6N2E2_1125 at 1321.537 kb on + strand, within Pf6N2E2_1125 at 1321.538 kb on - strand, within Pf6N2E2_1125 at 1321.927 kb on + strand, within Pf6N2E2_1126 at 1321.927 kb on + strand, within Pf6N2E2_1126 at 1321.929 kb on + strand, within Pf6N2E2_1126 at 1321.929 kb on + strand, within Pf6N2E2_1126 at 1321.929 kb on + strand, within Pf6N2E2_1126 at 1321.929 kb on + strand, within Pf6N2E2_1126 at 1321.930 kb on - strand, within Pf6N2E2_1126 at 1321.930 kb on - strand, within Pf6N2E2_1126 at 1321.930 kb on - strand, within Pf6N2E2_1126 at 1322.080 kb on - strand, within Pf6N2E2_1126 at 1322.330 kb on - strand at 1322.333 kb on + strand at 1322.333 kb on + strand at 1322.334 kb on - strand at 1322.365 kb on - strand at 1322.370 kb on + strand at 1322.370 kb on + strand at 1322.370 kb on + strand at 1322.370 kb on + strand at 1322.371 kb on - strand at 1322.371 kb on - strand at 1322.371 kb on - strand at 1322.371 kb on - strand at 1322.371 kb on - strand at 1322.749 kb on + strand, within Pf6N2E2_1127 at 1322.749 kb on + strand, within Pf6N2E2_1127 at 1322.749 kb on + strand, within Pf6N2E2_1127 at 1323.026 kb on + strand, within Pf6N2E2_1127 at 1323.026 kb on + strand, within Pf6N2E2_1127 at 1323.294 kb on + strand, within Pf6N2E2_1127 at 1323.295 kb on - strand, within Pf6N2E2_1127
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 1,320,895 - +0.1 1,320,922 + -0.8 1,320,922 + -0.6 1,320,922 + +0.0 1,320,923 - +2.1 1,321,081 + Pf6N2E2_1125 0.18 +0.3 1,321,081 + Pf6N2E2_1125 0.18 +0.2 1,321,082 - Pf6N2E2_1125 0.18 -1.2 1,321,082 - Pf6N2E2_1125 0.18 -0.8 1,321,132 + Pf6N2E2_1125 0.24 -0.4 1,321,143 - Pf6N2E2_1125 0.25 -0.3 1,321,241 + Pf6N2E2_1125 0.36 -0.8 1,321,242 - Pf6N2E2_1125 0.36 +1.0 1,321,300 - Pf6N2E2_1125 0.42 +0.0 1,321,484 - Pf6N2E2_1125 0.63 +0.1 1,321,537 + Pf6N2E2_1125 0.69 +0.2 1,321,538 - Pf6N2E2_1125 0.69 -1.5 1,321,927 + Pf6N2E2_1126 0.16 +0.3 1,321,927 + Pf6N2E2_1126 0.16 -0.4 1,321,929 + Pf6N2E2_1126 0.17 -0.3 1,321,929 + Pf6N2E2_1126 0.17 -1.3 1,321,929 + Pf6N2E2_1126 0.17 -0.4 1,321,929 + Pf6N2E2_1126 0.17 -1.2 1,321,930 - Pf6N2E2_1126 0.17 +0.0 1,321,930 - Pf6N2E2_1126 0.17 -0.7 1,321,930 - Pf6N2E2_1126 0.17 +0.6 1,322,080 - Pf6N2E2_1126 0.49 -0.3 1,322,330 - -0.1 1,322,333 + +0.1 1,322,333 + +0.3 1,322,334 - -0.3 1,322,365 - -0.6 1,322,370 + -0.3 1,322,370 + +1.1 1,322,370 + +1.0 1,322,370 + -0.1 1,322,371 - +0.4 1,322,371 - -1.1 1,322,371 - -0.1 1,322,371 - -0.2 1,322,371 - +0.2 1,322,749 + Pf6N2E2_1127 0.19 -0.3 1,322,749 + Pf6N2E2_1127 0.19 +0.2 1,322,749 + Pf6N2E2_1127 0.19 +1.0 1,323,026 + Pf6N2E2_1127 0.31 +0.1 1,323,026 + Pf6N2E2_1127 0.31 -0.5 1,323,294 + Pf6N2E2_1127 0.42 +0.1 1,323,295 - Pf6N2E2_1127 0.42 -0.3
Or see this region's nucleotide sequence