Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14310

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
3,185,502	+		LRK54_RS14305	0.59	-1.7
3,185,502	+		LRK54_RS14305	0.59	-2.3
3,185,502	+		LRK54_RS14305	0.59	-1.3
3,185,503	-		LRK54_RS14305	0.59	+1.5
3,185,503	-		LRK54_RS14305	0.59	+2.6
3,185,523	+		LRK54_RS14305	0.60	+1.5
3,185,523	+		LRK54_RS14305	0.60	+1.3
3,185,523	+		LRK54_RS14305	0.60	-1.2
3,185,523	+		LRK54_RS14305	0.60	+1.2
3,185,523	+		LRK54_RS14305	0.60	-0.8
3,185,523	+		LRK54_RS14305	0.60	+1.3
3,185,523	+		LRK54_RS14305	0.60	-0.5
3,185,524	-		LRK54_RS14305	0.60	+0.1
3,185,524	-		LRK54_RS14305	0.60	+0.9
3,185,524	-		LRK54_RS14305	0.60	+0.5
3,185,524	-		LRK54_RS14305	0.60	-0.5
3,185,524	-		LRK54_RS14305	0.60	-0.1
3,185,524	-		LRK54_RS14305	0.60	+0.6
3,185,524	-		LRK54_RS14305	0.60	+0.3
3,185,646	+		LRK54_RS14305	0.65	-0.6
3,185,646	+		LRK54_RS14305	0.65	+0.4
3,185,646	+		LRK54_RS14305	0.65	-1.2
3,185,646	+		LRK54_RS14305	0.65	-0.9
3,185,646	+		LRK54_RS14305	0.65	-0.4
3,185,646	+		LRK54_RS14305	0.65	-0.5
3,185,646	+		LRK54_RS14305	0.65	-0.5
3,185,646	+		LRK54_RS14305	0.65	-0.4
3,185,647	-		LRK54_RS14305	0.65	+0.7
3,185,647	-		LRK54_RS14305	0.65	-2.3
3,185,647	-		LRK54_RS14305	0.65	+0.6
3,185,647	-		LRK54_RS14305	0.65	+1.1
3,185,647	-		LRK54_RS14305	0.65	+1.9
3,185,647	-		LRK54_RS14305	0.65	-0.0
3,185,647	-		LRK54_RS14305	0.65	-0.4
3,185,647	-		LRK54_RS14305	0.65	+0.7
3,185,647	-		LRK54_RS14305	0.65	+1.0
3,185,647	-		LRK54_RS14305	0.65	-1.0
3,186,024	+		LRK54_RS14305	0.83	-1.9
3,186,025	-		LRK54_RS14305	0.83	+0.2
3,186,025	-		LRK54_RS14305	0.83	+2.9
3,186,025	-		LRK54_RS14305	0.83	+1.1
3,186,042	+		LRK54_RS14305	0.83	+0.3
3,186,042	+		LRK54_RS14305	0.83	-1.0
3,186,042	+		LRK54_RS14305	0.83	-1.0
3,186,042	+		LRK54_RS14305	0.83	-1.0
3,186,042	+		LRK54_RS14305	0.83	-0.8
3,186,042	+		LRK54_RS14305	0.83	-0.5
3,186,043	-		LRK54_RS14305	0.84	-2.2
3,186,043	-		LRK54_RS14305	0.84	-0.1
3,186,043	-		LRK54_RS14305	0.84	+0.8
3,186,043	-		LRK54_RS14305	0.84	+2.1
3,186,043	-		LRK54_RS14305	0.84	+0.1
3,186,043	-		LRK54_RS14305	0.84	-0.1
3,186,043	-		LRK54_RS14305	0.84	+0.8
3,186,096	-		LRK54_RS14305	0.86	+0.1
3,186,096	-		LRK54_RS14305	0.86	+1.5
3,186,163	-		LRK54_RS14305	0.89	-1.6
3,186,163	-		LRK54_RS14305	0.89	-0.8
3,186,163	-		LRK54_RS14305	0.89	+1.5
3,186,201	+				+0.3
3,186,201	+				-0.1
3,186,201	+				-0.4
3,186,202	-				-1.7
3,186,202	-				-0.7
3,186,225	+				-1.3
3,186,225	+				+1.5
3,186,225	+				-0.6
3,186,225	+				-1.9
3,186,225	+				-1.6
3,186,225	+				+0.2
3,186,225	+				-0.3
3,186,226	-				-1.5
3,186,226	-				-0.1
3,186,226	-				+0.8
3,186,527	-		LRK54_RS14310	0.12	+0.4
3,186,527	-		LRK54_RS14310	0.12	+0.3
3,186,602	+		LRK54_RS14310	0.19	-2.5
3,186,602	+		LRK54_RS14310	0.19	-0.6
3,186,602	+		LRK54_RS14310	0.19	-0.7
3,186,603	-		LRK54_RS14310	0.19	+1.0
3,186,603	-		LRK54_RS14310	0.19	+0.6
3,186,603	-		LRK54_RS14310	0.19	-1.6
3,186,677	+		LRK54_RS14310	0.26	+1.2
3,186,677	+		LRK54_RS14310	0.26	+0.8
3,186,677	+		LRK54_RS14310	0.26	-0.7
3,186,677	+		LRK54_RS14310	0.26	+1.3
3,186,678	-		LRK54_RS14310	0.26	-0.1
3,186,830	+		LRK54_RS14310	0.40	+0.3
3,186,831	-		LRK54_RS14310	0.40	-2.4
3,186,831	-		LRK54_RS14310	0.40	-0.5
3,187,043	+		LRK54_RS14310	0.60	+1.1
3,187,043	+		LRK54_RS14310	0.60	-0.8
3,187,044	-		LRK54_RS14310	0.60	-0.1
3,187,044	-		LRK54_RS14310	0.60	-2.1
3,187,044	-		LRK54_RS14310	0.60	+0.7
3,187,629	+				-1.2
3,187,629	+				-0.6
3,187,629	+				+1.2
3,187,629	+				+1.8
3,187,629	+				-1.3
3,187,629	+				-1.0
3,187,630	-				+0.5
3,187,630	-				-0.1
3,187,630	-				-0.2
3,187,630	-				+0.7
3,187,734	+		LRK54_RS14315	0.20	-1.2
3,187,734	+		LRK54_RS14315	0.20	+1.1
3,187,735	-		LRK54_RS14315	0.20	+0.6
3,187,735	-		LRK54_RS14315	0.20	-0.4
3,187,735	-		LRK54_RS14315	0.20	-0.8
3,187,735	-		LRK54_RS14315	0.20	+1.2
3,187,735	-		LRK54_RS14315	0.20	-1.4
3,187,735	-		LRK54_RS14315	0.20	+1.2
3,187,738	+		LRK54_RS14315	0.20	+1.4
3,187,738	+		LRK54_RS14315	0.20	+0.8
3,187,738	+		LRK54_RS14315	0.20	-0.9
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	+1.8
3,187,738	+		LRK54_RS14315	0.20	+0.5
3,187,738	+		LRK54_RS14315	0.20	+0.1
3,187,738	+		LRK54_RS14315	0.20	+0.3
3,187,738	+		LRK54_RS14315	0.20	-1.4
3,187,738	+		LRK54_RS14315	0.20	-0.6
3,187,738	+		LRK54_RS14315	0.20	-0.6
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	-1.7
3,187,738	+		LRK54_RS14315	0.20	+0.3
3,187,738	+		LRK54_RS14315	0.20	+0.9
3,187,738	+		LRK54_RS14315	0.20	-0.5
3,187,738	+		LRK54_RS14315	0.20	+1.4
3,187,738	+		LRK54_RS14315	0.20	-1.6
3,187,738	+		LRK54_RS14315	0.20	+1.3
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	+0.3
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	+0.8
3,187,738	+		LRK54_RS14315	0.20	+1.3
3,187,738	+		LRK54_RS14315	0.20	+0.7
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	-0.6
3,187,738	+		LRK54_RS14315	0.20	+1.5
3,187,738	+		LRK54_RS14315	0.20	-1.8
3,187,738	+		LRK54_RS14315	0.20	+0.3
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	+0.1
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	-0.6
3,187,738	+		LRK54_RS14315	0.20	-0.3
3,187,738	+		LRK54_RS14315	0.20	+0.1
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	-0.7
3,187,738	+		LRK54_RS14315	0.20	-1.2
3,187,738	+		LRK54_RS14315	0.20	-1.5
3,187,738	+		LRK54_RS14315	0.20	-1.9
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	-0.9
3,187,738	+		LRK54_RS14315	0.20	-1.7
3,187,739	-		LRK54_RS14315	0.20	-1.3
3,187,739	-		LRK54_RS14315	0.20	+0.4
3,187,739	-		LRK54_RS14315	0.20	-1.6
3,187,739	-		LRK54_RS14315	0.20	+0.9
3,187,739	-		LRK54_RS14315	0.20	+1.1
3,187,739	-		LRK54_RS14315	0.20	+1.1
3,187,739	-		LRK54_RS14315	0.20	+0.1
3,187,739	-		LRK54_RS14315	0.20	-1.3
3,187,739	-		LRK54_RS14315	0.20	+0.9
3,187,739	-		LRK54_RS14315	0.20	+0.0
3,187,739	-		LRK54_RS14315	0.20	-1.8
3,187,739	-		LRK54_RS14315	0.20	+0.4
3,187,739	-		LRK54_RS14315	0.20	+1.9
3,187,739	-		LRK54_RS14315	0.20	-0.7
3,187,739	-		LRK54_RS14315	0.20	-0.4
3,187,739	-		LRK54_RS14315	0.20	-1.5
3,187,739	-		LRK54_RS14315	0.20	-0.9
3,187,739	-		LRK54_RS14315	0.20	+0.2
3,187,739	-		LRK54_RS14315	0.20	+1.6
3,187,739	-		LRK54_RS14315	0.20	+3.3
3,187,739	-		LRK54_RS14315	0.20	+1.2
3,187,739	-		LRK54_RS14315	0.20	-0.2
3,187,739	-		LRK54_RS14315	0.20	+2.1
3,187,739	-		LRK54_RS14315	0.20	+2.1
3,187,739	-		LRK54_RS14315	0.20	+0.2
3,187,739	-		LRK54_RS14315	0.20	+4.1
3,187,739	-		LRK54_RS14315	0.20	+1.8
3,187,739	-		LRK54_RS14315	0.20	-0.9
3,187,739	-		LRK54_RS14315	0.20	-0.3
3,187,739	-		LRK54_RS14315	0.20	+0.3
3,187,739	-		LRK54_RS14315	0.20	-0.5
3,187,739	-		LRK54_RS14315	0.20	+0.9
3,187,739	-		LRK54_RS14315	0.20	+0.2
3,187,739	-		LRK54_RS14315	0.20	-1.1
3,187,739	-		LRK54_RS14315	0.20	-0.9
3,188,181	+		LRK54_RS14315	0.61	+0.6
3,188,181	+		LRK54_RS14315	0.61	-0.8
3,188,181	+		LRK54_RS14315	0.61	+1.1
3,188,181	+		LRK54_RS14315	0.61	+1.4
3,188,181	+		LRK54_RS14315	0.61	-0.9
3,188,181	+		LRK54_RS14315	0.61	+1.3
3,188,181	+		LRK54_RS14315	0.61	-1.8
3,188,181	+		LRK54_RS14315	0.61	-2.0
3,188,181	+		LRK54_RS14315	0.61	-0.4
3,188,181	+		LRK54_RS14315	0.61	-0.1
3,188,182	-		LRK54_RS14315	0.61	+1.2
3,188,182	-		LRK54_RS14315	0.61	-1.0
3,188,182	-		LRK54_RS14315	0.61	+2.1
3,188,182	-		LRK54_RS14315	0.61	-0.5
3,188,182	-		LRK54_RS14315	0.61	-0.3
3,188,182	-		LRK54_RS14315	0.61	-0.0
3,188,182	-		LRK54_RS14315	0.61	-0.9
3,188,182	-		LRK54_RS14315	0.61	+0.1
3,188,182	-		LRK54_RS14315	0.61	+1.6
3,188,182	-		LRK54_RS14315	0.61	-2.2
3,188,182	-		LRK54_RS14315	0.61	+0.7
3,188,448	+		LRK54_RS14315	0.86	-0.9
3,188,448	+		LRK54_RS14315	0.86	-0.8
3,188,448	+		LRK54_RS14315	0.86	+2.1
3,188,448	+		LRK54_RS14315	0.86	-0.4
3,188,448	+		LRK54_RS14315	0.86	-0.5
3,188,448	+		LRK54_RS14315	0.86	-1.4
3,188,448	-		LRK54_RS14315	0.86	-0.7
3,188,449	-		LRK54_RS14315	0.86	-0.2
3,188,449	-		LRK54_RS14315	0.86	+0.1
3,188,449	-		LRK54_RS14315	0.86	+0.2
3,188,449	-		LRK54_RS14315	0.86	+1.1
3,188,449	-		LRK54_RS14315	0.86	+1.1
3,188,449	-		LRK54_RS14315	0.86	+1.0
3,188,449	-		LRK54_RS14315	0.86	-0.7
3,188,466	+		LRK54_RS14315	0.87	+0.3
3,188,467	-		LRK54_RS14315	0.87	-1.5
3,188,467	-		LRK54_RS14315	0.87	-1.0
3,188,467	-		LRK54_RS14315	0.87	+1.1