Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05810

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
1,252,439	-				-0.9
1,252,541	+		LRK54_RS05800	0.14	-0.8
1,252,542	-		LRK54_RS05800	0.14	+1.7
1,252,542	-		LRK54_RS05800	0.14	-0.6
1,252,542	-		LRK54_RS05800	0.14	+0.3
1,252,664	+		LRK54_RS05800	0.44	-1.1
1,252,664	+		LRK54_RS05800	0.44	+0.3
1,252,664	+		LRK54_RS05800	0.44	-0.4
1,252,664	+		LRK54_RS05800	0.44	-1.0
1,252,665	-		LRK54_RS05800	0.44	-2.1
1,252,665	-		LRK54_RS05800	0.44	+1.0
1,252,796	+		LRK54_RS05800	0.76	+0.6
1,252,797	-		LRK54_RS05800	0.76	+0.1
1,252,797	-		LRK54_RS05800	0.76	-1.1
1,252,841	+		LRK54_RS05800	0.87	-1.1
1,252,842	-		LRK54_RS05800	0.87	-1.6
1,252,892	+				-1.2
1,252,893	-				-1.7
1,252,893	-				-2.9
1,252,933	+				+0.0
1,252,933	+				-0.2
1,252,933	+				-0.4
1,252,933	+				-1.2
1,252,933	+				+0.7
1,252,933	+				-0.7
1,252,934	-				-1.6
1,252,934	-				-1.0
1,252,934	-				-0.7
1,252,934	-				-1.5
1,252,934	-				-0.4
1,252,934	-				-1.0
1,252,934	-				-0.6
1,253,056	+		LRK54_RS05805	0.30	+0.0
1,253,056	+		LRK54_RS05805	0.30	+0.0
1,253,056	+		LRK54_RS05805	0.30	+0.1
1,253,056	+		LRK54_RS05805	0.30	+1.9
1,253,057	-		LRK54_RS05805	0.30	+0.3
1,253,057	-		LRK54_RS05805	0.30	-0.3
1,253,057	-		LRK54_RS05805	0.30	+0.8
1,253,057	-		LRK54_RS05805	0.30	+2.2
1,253,421	+				+1.3
1,253,421	+				+1.8
1,253,421	+				-1.1
1,253,421	+				+0.5
1,253,421	+				+0.5
1,253,421	+				-1.5
1,253,421	+				+1.7
1,253,421	+				-1.2
1,253,421	+				+0.2
1,253,421	+				+1.4
1,253,421	+				-1.5
1,253,421	+				+0.6
1,253,421	+				-1.9
1,253,421	+				-0.9
1,253,421	+				+0.1
1,253,421	+				+0.2
1,253,421	+				-0.7
1,253,421	+				-2.1
1,253,421	+				-0.4
1,253,421	+				-0.6
1,253,421	+				-0.7
1,253,421	+				-0.1
1,253,421	+				-2.3
1,253,422	-				-2.9
1,253,422	-				-0.4
1,253,422	-				+0.7
1,253,422	-				-1.3
1,253,422	-				+1.1
1,253,422	-				-0.7
1,253,422	-				+0.2
1,253,422	-				+1.5
1,253,422	-				-0.0
1,253,422	-				-0.2
1,253,422	-				-0.2
1,253,422	-				+1.2
1,253,422	-				-0.5
1,253,422	-				-0.0
1,253,422	-				-0.5
1,253,433	+				-1.6
1,253,433	+				-2.0
1,253,433	+				-0.4
1,253,433	+				-0.1
1,253,433	+				-1.3
1,253,433	+				-0.3
1,253,433	+				+1.2
1,253,433	+				+0.4
1,253,433	+				-0.8
1,253,433	+				+0.5
1,253,433	+				-0.0
1,253,433	+				+0.0
1,253,433	+				-0.4
1,253,433	+				+1.8
1,253,433	+				+1.1
1,253,434	-				-1.0
1,253,434	-				+0.3
1,253,434	-				+1.5
1,253,434	-				+0.7
1,253,434	-				+1.1
1,253,434	-				+0.8
1,253,434	-				-0.2
1,253,434	-				+1.0
1,253,434	-				-0.9
1,253,434	-				+0.3
1,253,434	-				-1.0
1,253,434	-				+0.5
1,253,434	-				-1.3
1,253,434	-				+0.3
1,253,434	-				+0.8
1,253,434	-				-1.7
1,253,434	-				-1.0
1,253,434	-				+0.5
1,253,434	-				+0.3
1,253,434	-				-1.7
1,253,434	-				-1.8
1,253,434	-				-0.8
1,253,434	-				-1.4
1,253,439	+				-1.0
1,253,439	+				+0.1
1,253,439	+				-1.3
1,253,439	+				+0.1
1,253,439	+				+0.3
1,253,439	+				+1.7
1,253,439	+				+0.8
1,253,439	+				-0.0
1,253,439	+				+2.8
1,253,439	+				+0.5
1,253,439	+				-1.0
1,253,439	+				+0.0
1,253,439	+				-2.3
1,253,439	+				+0.2
1,253,439	+				+1.0
1,253,439	+				-0.3
1,253,439	+				-1.3
1,253,439	+				-0.5
1,253,439	+				+1.5
1,253,440	-				-2.1
1,253,440	-				-2.4
1,253,440	-				-0.7
1,253,440	-				-0.5
1,253,440	-				+0.2
1,253,440	-				+0.1
1,253,440	-				-0.6
1,253,440	-				-1.4
1,253,440	-				-0.4
1,253,440	-				+0.4
1,253,440	-				-0.7
1,253,440	-				+1.1
1,253,440	-				-0.9
1,253,801	+		LRK54_RS05810	0.84	+1.5
1,253,802	-		LRK54_RS05810	0.84	-0.7
1,253,802	-		LRK54_RS05810	0.84	+1.2
1,253,857	-				-1.8
1,253,857	-				-1.0
1,254,112	+		LRK54_RS05815	0.27	-0.4
1,254,208	+		LRK54_RS05815	0.44	+1.3
1,254,208	+		LRK54_RS05815	0.44	-0.3
1,254,208	+		LRK54_RS05815	0.44	-2.6
1,254,208	+		LRK54_RS05815	0.44	+0.1
1,254,208	+		LRK54_RS05815	0.44	+1.3
1,254,208	+		LRK54_RS05815	0.44	+2.5
1,254,209	-		LRK54_RS05815	0.44	+0.5
1,254,209	-		LRK54_RS05815	0.44	+0.2
1,254,209	-		LRK54_RS05815	0.44	+0.1
1,254,209	-		LRK54_RS05815	0.44	-0.4
1,254,209	-		LRK54_RS05815	0.44	-2.1
1,254,209	-		LRK54_RS05815	0.44	+1.2
1,254,209	-		LRK54_RS05815	0.44	-0.8
1,254,209	-		LRK54_RS05815	0.44	-1.0
1,254,355	+		LRK54_RS05815	0.69	-0.5
1,254,355	+		LRK54_RS05815	0.69	-1.2
1,254,355	+		LRK54_RS05815	0.69	+2.1
1,254,355	+		LRK54_RS05815	0.69	-0.7
1,254,355	+		LRK54_RS05815	0.69	+2.2
1,254,355	+		LRK54_RS05815	0.69	+0.1
1,254,355	+		LRK54_RS05815	0.69	+0.2
1,254,355	+		LRK54_RS05815	0.69	-0.0
1,254,355	+		LRK54_RS05815	0.69	+0.7
1,254,355	+		LRK54_RS05815	0.69	-0.2
1,254,355	+		LRK54_RS05815	0.69	-0.5
1,254,355	+		LRK54_RS05815	0.69	+0.7
1,254,355	+		LRK54_RS05815	0.69	-0.8
1,254,355	+		LRK54_RS05815	0.69	-1.6
1,254,355	+		LRK54_RS05815	0.69	+1.0
1,254,355	+		LRK54_RS05815	0.69	-0.2
1,254,355	+		LRK54_RS05815	0.69	-1.4
1,254,355	+		LRK54_RS05815	0.69	+0.8
1,254,355	+		LRK54_RS05815	0.69	-1.3
1,254,355	+		LRK54_RS05815	0.69	+0.2
1,254,355	+		LRK54_RS05815	0.69	+0.4
1,254,355	+		LRK54_RS05815	0.69	+2.3
1,254,355	+		LRK54_RS05815	0.69	+2.1
1,254,355	+		LRK54_RS05815	0.69	-0.5
1,254,355	+		LRK54_RS05815	0.69	+0.9
1,254,355	+		LRK54_RS05815	0.69	-0.2
1,254,355	+		LRK54_RS05815	0.69	-0.4
1,254,355	+		LRK54_RS05815	0.69	-1.2
1,254,355	+		LRK54_RS05815	0.69	+1.6
1,254,355	+		LRK54_RS05815	0.69	-0.3
1,254,355	+		LRK54_RS05815	0.69	+1.5
1,254,356	-		LRK54_RS05815	0.69	-0.1
1,254,356	-		LRK54_RS05815	0.69	-0.8
1,254,356	-		LRK54_RS05815	0.69	-2.7
1,254,356	-		LRK54_RS05815	0.69	+0.4
1,254,356	-		LRK54_RS05815	0.69	+0.2
1,254,356	-		LRK54_RS05815	0.69	+0.4
1,254,356	-		LRK54_RS05815	0.69	-1.4
1,254,356	-		LRK54_RS05815	0.69	+1.7
1,254,356	-		LRK54_RS05815	0.69	-1.3
1,254,356	-		LRK54_RS05815	0.69	-0.8
1,254,356	-		LRK54_RS05815	0.69	+0.0
1,254,356	-		LRK54_RS05815	0.69	+0.7
1,254,356	-		LRK54_RS05815	0.69	+0.1
1,254,356	-		LRK54_RS05815	0.69	+0.4
1,254,356	-		LRK54_RS05815	0.69	+0.1
1,254,356	-		LRK54_RS05815	0.69	-1.2
1,254,356	-		LRK54_RS05815	0.69	-1.4
1,254,356	-		LRK54_RS05815	0.69	-0.7
1,254,445	+		LRK54_RS05815	0.85	-0.2
1,254,445	+		LRK54_RS05815	0.85	-1.3
1,254,445	+		LRK54_RS05815	0.85	-0.8
1,254,445	+		LRK54_RS05815	0.85	-0.7
1,254,445	+		LRK54_RS05815	0.85	-1.1
1,254,445	+		LRK54_RS05815	0.85	-0.1
1,254,445	+		LRK54_RS05815	0.85	+1.2
1,254,445	+		LRK54_RS05815	0.85	+1.1
1,254,445	+		LRK54_RS05815	0.85	-1.1
1,254,446	-		LRK54_RS05815	0.85	-1.2
1,254,446	-		LRK54_RS05815	0.85	+0.0
1,254,446	-		LRK54_RS05815	0.85	-2.0
1,254,446	-		LRK54_RS05815	0.85	-0.1
1,254,446	-		LRK54_RS05815	0.85	-0.9
1,254,446	-		LRK54_RS05815	0.85	+0.3
1,254,446	-		LRK54_RS05815	0.85	+1.1
1,254,446	-		LRK54_RS05815	0.85	+1.7
1,254,446	-		LRK54_RS05815	0.85	-1.5
1,254,535	+				+0.5
1,254,535	+				-1.1
1,254,535	+				-0.7
1,254,535	+				-0.7
1,254,535	+				-0.1
1,254,535	+				+0.4
1,254,535	+				+0.0
1,254,535	+				+0.3
1,254,535	+				-0.6
1,254,535	+				-0.7
1,254,535	+				-2.0
1,254,535	+				+0.1
1,254,536	-				+0.3
1,254,536	-				-0.4
1,254,536	-				-1.9
1,254,536	-				+0.7
1,254,536	-				+0.0
1,254,536	-				-0.1
1,254,536	-				+1.7
1,254,536	-				-0.3
1,254,536	-				+0.7
1,254,536	-				+1.0
1,254,536	-				-0.1
1,254,536	-				-1.6
1,254,536	-				-1.1
1,254,536	-				+0.7
1,254,536	-				-0.7
1,254,536	-				+1.0
1,254,536	-				-0.4
1,254,630	+		LRK54_RS05820	0.12	-0.1
1,254,630	+		LRK54_RS05820	0.12	+3.1
1,254,630	+		LRK54_RS05820	0.12	+1.2
1,254,630	+		LRK54_RS05820	0.12	-1.7
1,254,630	+		LRK54_RS05820	0.12	+1.2
1,254,630	+		LRK54_RS05820	0.12	-1.5
1,254,630	+		LRK54_RS05820	0.12	-0.7
1,254,630	+		LRK54_RS05820	0.12	-0.8
1,254,630	+		LRK54_RS05820	0.12	+0.3
1,254,630	+		LRK54_RS05820	0.12	+0.3
1,254,631	-		LRK54_RS05820	0.12	+0.6
1,254,631	-		LRK54_RS05820	0.12	-2.3
1,254,631	-		LRK54_RS05820	0.12	-0.0
1,254,631	-		LRK54_RS05820	0.12	-1.6
1,254,631	-		LRK54_RS05820	0.12	-1.3
1,254,631	-		LRK54_RS05820	0.12	-0.3
1,254,631	-		LRK54_RS05820	0.12	-0.9
1,254,631	-		LRK54_RS05820	0.12	+0.2
1,254,631	-		LRK54_RS05820	0.12	+1.7
1,254,631	-		LRK54_RS05820	0.12	-0.1
1,254,631	-		LRK54_RS05820	0.12	+0.5
1,254,631	-		LRK54_RS05820	0.12	-0.5
1,254,631	-		LRK54_RS05820	0.12	-0.6
1,254,631	-		LRK54_RS05820	0.12	-1.0
1,254,631	-		LRK54_RS05820	0.12	+0.9
1,254,631	-		LRK54_RS05820	0.12	+0.5
1,254,631	-		LRK54_RS05820	0.12	-1.2
1,254,631	-		LRK54_RS05820	0.12	-0.7
1,254,631	-		LRK54_RS05820	0.12	-0.3
1,254,631	-		LRK54_RS05820	0.12	+0.2
1,254,631	-		LRK54_RS05820	0.12	+0.2
1,254,680	+		LRK54_RS05820	0.18	+0.3
1,254,680	+		LRK54_RS05820	0.18	-0.8
1,254,680	+		LRK54_RS05820	0.18	-0.7
1,254,680	+		LRK54_RS05820	0.18	-0.2
1,254,680	+		LRK54_RS05820	0.18	-0.7
1,254,680	+		LRK54_RS05820	0.18	+1.0
1,254,680	+		LRK54_RS05820	0.18	+0.3
1,254,680	+		LRK54_RS05820	0.18	-1.0
1,254,680	+		LRK54_RS05820	0.18	+1.5
1,254,680	+		LRK54_RS05820	0.18	-1.6
1,254,681	-		LRK54_RS05820	0.19	-0.8
1,254,681	-		LRK54_RS05820	0.19	-0.2
1,254,681	-		LRK54_RS05820	0.19	-1.7
1,254,681	-		LRK54_RS05820	0.19	+0.3
1,254,681	-		LRK54_RS05820	0.19	+0.5
1,254,681	-		LRK54_RS05820	0.19	+1.1
1,254,681	-		LRK54_RS05820	0.19	+0.4
1,254,681	-		LRK54_RS05820	0.19	-0.7
1,254,681	-		LRK54_RS05820	0.19	-0.2
1,254,681	-		LRK54_RS05820	0.19	-0.4
1,254,780	+		LRK54_RS05820	0.32	-0.7
1,254,780	+		LRK54_RS05820	0.32	+0.1
1,254,780	+		LRK54_RS05820	0.32	+0.3
1,254,780	+		LRK54_RS05820	0.32	+2.1
1,254,780	+		LRK54_RS05820	0.32	-0.5
1,254,780	+		LRK54_RS05820	0.32	-1.3
1,254,780	+		LRK54_RS05820	0.32	-1.2
1,254,780	+		LRK54_RS05820	0.32	+1.2
1,254,781	-		LRK54_RS05820	0.32	-1.3
1,254,781	-		LRK54_RS05820	0.32	+1.8
1,254,781	-		LRK54_RS05820	0.32	+0.6
1,254,781	-		LRK54_RS05820	0.32	+0.4
1,254,781	-		LRK54_RS05820	0.32	-0.9
1,254,781	-		LRK54_RS05820	0.32	-0.1
1,254,781	-		LRK54_RS05820	0.32	-0.4
1,254,781	-		LRK54_RS05820	0.32	-0.3
1,254,834	+		LRK54_RS05820	0.39	-2.0