Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22960 and HSERO_RS22965 are separated by 125 nucleotides HSERO_RS22965 and HSERO_RS22970 are separated by 15 nucleotides HSERO_RS22970 and HSERO_RS22975 are separated by 173 nucleotides
HSERO_RS22960: HSERO_RS22960 - glyoxalase, at 5,268,802 to 5,269,188
_RS22960
HSERO_RS22965: HSERO_RS22965 - activator of HSP90 ATPase, at 5,269,314 to 5,269,769
_RS22965
HSERO_RS22970: HSERO_RS22970 - membrane protein, at 5,269,785 to 5,271,455
_RS22970
HSERO_RS22975: HSERO_RS22975 - chemotaxis protein, at 5,271,629 to 5,273,191
_RS22975
Position (kb) 5269
5270
5271
5272 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5268.791 kb on - strand at 5269.057 kb on + strand, within HSERO_RS22960 at 5269.186 kb on - strand at 5269.319 kb on - strand at 5269.319 kb on - strand at 5269.319 kb on - strand at 5269.330 kb on - strand at 5269.355 kb on - strand at 5269.559 kb on + strand, within HSERO_RS22965 at 5269.780 kb on - strand at 5269.810 kb on + strand at 5269.942 kb on - strand at 5269.969 kb on - strand, within HSERO_RS22970 at 5270.006 kb on - strand, within HSERO_RS22970 at 5270.055 kb on + strand, within HSERO_RS22970 at 5270.314 kb on - strand, within HSERO_RS22970 at 5270.648 kb on + strand, within HSERO_RS22970 at 5270.682 kb on + strand, within HSERO_RS22970 at 5270.703 kb on - strand, within HSERO_RS22970 at 5270.775 kb on + strand, within HSERO_RS22970 at 5270.798 kb on - strand, within HSERO_RS22970 at 5270.905 kb on + strand, within HSERO_RS22970 at 5270.991 kb on - strand, within HSERO_RS22970 at 5271.063 kb on + strand, within HSERO_RS22970 at 5271.087 kb on + strand, within HSERO_RS22970 at 5271.228 kb on - strand, within HSERO_RS22970 at 5271.310 kb on + strand at 5271.341 kb on - strand at 5271.361 kb on + strand at 5271.397 kb on + strand at 5271.425 kb on - strand at 5271.507 kb on + strand at 5271.531 kb on + strand at 5271.546 kb on + strand at 5271.796 kb on + strand, within HSERO_RS22975 at 5271.816 kb on - strand, within HSERO_RS22975 at 5271.902 kb on - strand, within HSERO_RS22975 at 5271.930 kb on + strand, within HSERO_RS22975 at 5271.943 kb on - strand, within HSERO_RS22975 at 5271.980 kb on - strand at 5271.990 kb on - strand, within HSERO_RS22975 at 5272.115 kb on - strand, within HSERO_RS22975 at 5272.137 kb on + strand, within HSERO_RS22975 at 5272.149 kb on + strand, within HSERO_RS22975 at 5272.198 kb on + strand, within HSERO_RS22975 at 5272.294 kb on + strand, within HSERO_RS22975 at 5272.302 kb on - strand, within HSERO_RS22975 at 5272.338 kb on + strand, within HSERO_RS22975 at 5272.401 kb on + strand, within HSERO_RS22975 at 5272.426 kb on - strand, within HSERO_RS22975 at 5272.433 kb on + strand, within HSERO_RS22975
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 5,268,791 - -1.0 5,269,057 + HSERO_RS22960 0.66 -0.0 5,269,186 - -0.7 5,269,319 - +1.0 5,269,319 - -0.3 5,269,319 - +1.6 5,269,330 - -0.2 5,269,355 - +0.4 5,269,559 + HSERO_RS22965 0.54 +0.1 5,269,780 - -0.6 5,269,810 + +0.5 5,269,942 - -0.3 5,269,969 - HSERO_RS22970 0.11 +1.0 5,270,006 - HSERO_RS22970 0.13 +1.0 5,270,055 + HSERO_RS22970 0.16 -1.8 5,270,314 - HSERO_RS22970 0.32 +0.5 5,270,648 + HSERO_RS22970 0.52 +0.4 5,270,682 + HSERO_RS22970 0.54 +0.7 5,270,703 - HSERO_RS22970 0.55 +0.9 5,270,775 + HSERO_RS22970 0.59 +1.6 5,270,798 - HSERO_RS22970 0.61 -0.3 5,270,905 + HSERO_RS22970 0.67 -0.4 5,270,991 - HSERO_RS22970 0.72 +0.4 5,271,063 + HSERO_RS22970 0.76 -0.2 5,271,087 + HSERO_RS22970 0.78 +0.8 5,271,228 - HSERO_RS22970 0.86 -0.5 5,271,310 + -0.3 5,271,341 - +0.1 5,271,361 + +0.1 5,271,397 + -0.4 5,271,425 - -0.2 5,271,507 + +0.5 5,271,531 + -0.0 5,271,546 + +2.5 5,271,796 + HSERO_RS22975 0.11 +3.0 5,271,816 - HSERO_RS22975 0.12 +0.1 5,271,902 - HSERO_RS22975 0.17 +0.1 5,271,930 + HSERO_RS22975 0.19 +0.0 5,271,943 - HSERO_RS22975 0.20 -0.2 5,271,980 - -1.3 5,271,990 - HSERO_RS22975 0.23 +0.6 5,272,115 - HSERO_RS22975 0.31 +0.1 5,272,137 + HSERO_RS22975 0.33 -1.4 5,272,149 + HSERO_RS22975 0.33 +1.3 5,272,198 + HSERO_RS22975 0.36 +0.5 5,272,294 + HSERO_RS22975 0.43 +0.3 5,272,302 - HSERO_RS22975 0.43 -0.2 5,272,338 + HSERO_RS22975 0.45 +0.5 5,272,401 + HSERO_RS22975 0.49 -1.9 5,272,426 - HSERO_RS22975 0.51 -0.6 5,272,433 + HSERO_RS22975 0.51 -0.6
Or see this region's nucleotide sequence