Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22915 and HSERO_RS22920 are separated by 24 nucleotides HSERO_RS22920 and HSERO_RS22925 are separated by 185 nucleotides HSERO_RS22925 and HSERO_RS22930 are separated by 18 nucleotides
HSERO_RS22915: HSERO_RS22915 - Fis family transcriptional regulator, at 5,257,781 to 5,259,616
_RS22915
HSERO_RS22920: HSERO_RS22920 - hypothetical protein, at 5,259,641 to 5,259,928
_RS22920
HSERO_RS22925: HSERO_RS22925 - MFS transporter, at 5,260,114 to 5,261,550
_RS22925
HSERO_RS22930: HSERO_RS22930 - helicase, at 5,261,569 to 5,264,058
_RS22930
Position (kb) 5260
5261
5262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.176 kb on - strand, within HSERO_RS22915 at 5259.318 kb on + strand, within HSERO_RS22915 at 5259.449 kb on + strand at 5259.834 kb on + strand, within HSERO_RS22920 at 5259.878 kb on + strand, within HSERO_RS22920 at 5259.891 kb on - strand, within HSERO_RS22920 at 5259.979 kb on + strand at 5260.223 kb on + strand at 5260.263 kb on + strand, within HSERO_RS22925 at 5260.344 kb on - strand, within HSERO_RS22925 at 5260.455 kb on + strand, within HSERO_RS22925 at 5260.478 kb on - strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.537 kb on - strand, within HSERO_RS22925 at 5260.672 kb on - strand, within HSERO_RS22925 at 5260.788 kb on + strand, within HSERO_RS22925 at 5260.809 kb on + strand, within HSERO_RS22925 at 5260.817 kb on - strand, within HSERO_RS22925 at 5260.932 kb on + strand, within HSERO_RS22925 at 5261.093 kb on - strand, within HSERO_RS22925 at 5261.129 kb on + strand, within HSERO_RS22925 at 5261.439 kb on + strand at 5261.466 kb on - strand at 5261.495 kb on + strand at 5261.841 kb on - strand, within HSERO_RS22930 at 5261.871 kb on - strand, within HSERO_RS22930 at 5262.006 kb on - strand, within HSERO_RS22930 at 5262.129 kb on - strand, within HSERO_RS22930 at 5262.212 kb on - strand, within HSERO_RS22930 at 5262.213 kb on + strand, within HSERO_RS22930 at 5262.274 kb on + strand, within HSERO_RS22930 at 5262.274 kb on + strand, within HSERO_RS22930 at 5262.280 kb on - strand, within HSERO_RS22930 at 5262.280 kb on - strand, within HSERO_RS22930 at 5262.372 kb on + strand, within HSERO_RS22930 at 5262.416 kb on + strand, within HSERO_RS22930 at 5262.422 kb on - strand, within HSERO_RS22930 at 5262.453 kb on + strand, within HSERO_RS22930
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 5,259,168 + HSERO_RS22915 0.76 +0.2 5,259,168 + HSERO_RS22915 0.76 +0.8 5,259,168 + HSERO_RS22915 0.76 -0.3 5,259,176 - HSERO_RS22915 0.76 +0.3 5,259,318 + HSERO_RS22915 0.84 -0.6 5,259,449 + -0.2 5,259,834 + HSERO_RS22920 0.67 -1.6 5,259,878 + HSERO_RS22920 0.82 -2.5 5,259,891 - HSERO_RS22920 0.87 +2.6 5,259,979 + +0.1 5,260,223 + -0.1 5,260,263 + HSERO_RS22925 0.10 +0.2 5,260,344 - HSERO_RS22925 0.16 +0.4 5,260,455 + HSERO_RS22925 0.24 +0.2 5,260,478 - HSERO_RS22925 0.25 +0.5 5,260,481 + HSERO_RS22925 0.26 +0.9 5,260,481 + HSERO_RS22925 0.26 -1.7 5,260,537 - HSERO_RS22925 0.29 +0.7 5,260,672 - HSERO_RS22925 0.39 -2.0 5,260,788 + HSERO_RS22925 0.47 +0.7 5,260,809 + HSERO_RS22925 0.48 +0.2 5,260,817 - HSERO_RS22925 0.49 +0.1 5,260,932 + HSERO_RS22925 0.57 +0.2 5,261,093 - HSERO_RS22925 0.68 +0.4 5,261,129 + HSERO_RS22925 0.71 +0.8 5,261,439 + +0.9 5,261,466 - +0.3 5,261,495 + -0.3 5,261,841 - HSERO_RS22930 0.11 -1.7 5,261,871 - HSERO_RS22930 0.12 -0.4 5,262,006 - HSERO_RS22930 0.18 +1.6 5,262,129 - HSERO_RS22930 0.22 +0.5 5,262,212 - HSERO_RS22930 0.26 +0.9 5,262,213 + HSERO_RS22930 0.26 +0.1 5,262,274 + HSERO_RS22930 0.28 +0.8 5,262,274 + HSERO_RS22930 0.28 -0.2 5,262,280 - HSERO_RS22930 0.29 +0.9 5,262,280 - HSERO_RS22930 0.29 +0.2 5,262,372 + HSERO_RS22930 0.32 +0.1 5,262,416 + HSERO_RS22930 0.34 +0.7 5,262,422 - HSERO_RS22930 0.34 +0.1 5,262,453 + HSERO_RS22930 0.36 -1.1
Or see this region's nucleotide sequence