Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14780

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS14770 and HSERO_RS14775 are separated by 39 nucleotidesHSERO_RS14775 and HSERO_RS14780 are separated by 139 nucleotidesHSERO_RS14780 and HSERO_RS14785 are separated by 26 nucleotides HSERO_RS14770: HSERO_RS14770 - GTP-binding protein HflX, at 3,353,753 to 3,354,877 _RS14770 HSERO_RS14775: HSERO_RS14775 - RNA-binding protein Hfq, at 3,354,917 to 3,355,156 _RS14775 HSERO_RS14780: HSERO_RS14780 - ribosome-associated GTPase EngA, at 3,355,296 to 3,356,639 _RS14780 HSERO_RS14785: HSERO_RS14785 - serine/threonine protein kinase, at 3,356,666 to 3,357,865 _RS14785 Position (kb) 3355 3356 3357Strain fitness (log2 ratio) -1 0 1 2at 3354.368 kb on - strand, within HSERO_RS14770at 3354.448 kb on + strand, within HSERO_RS14770at 3354.448 kb on + strand, within HSERO_RS14770at 3354.580 kb on + strand, within HSERO_RS14770at 3354.673 kb on + strand, within HSERO_RS14770at 3354.788 kb on - strandat 3356.771 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
3,354,368 - HSERO_RS14770 0.55 +0.3
3,354,448 + HSERO_RS14770 0.62 -0.2
3,354,448 + HSERO_RS14770 0.62 +0.8
3,354,580 + HSERO_RS14770 0.74 +1.4
3,354,673 + HSERO_RS14770 0.82 +1.9
3,354,788 - +0.9
3,356,771 - +0.4

Or see this region's nucleotide sequence