Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00625

Experiment: D-Raffinose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00630 and HMPREF1058_RS00625 are separated by 27 nucleotidesHMPREF1058_RS00625 and HMPREF1058_RS00620 are separated by 15 nucleotides HMPREF1058_RS00630: HMPREF1058_RS00630 - carbohydrate kinase, at 29,238 to 30,125 _RS00630 HMPREF1058_RS00625: HMPREF1058_RS00625 - MFS transporter, at 30,153 to 31,313 _RS00625 HMPREF1058_RS00620: HMPREF1058_RS00620 - GH32 C-terminal domain-containing protein, at 31,329 to 33,212 _RS00620 Position (kb) 30 31 32Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 29.158 kb on - strandat 29.298 kb on + strandat 29.298 kb on + strandat 29.299 kb on - strandat 29.299 kb on - strandat 29.299 kb on - strandat 29.299 kb on - strandat 29.302 kb on + strandat 29.303 kb on - strandat 29.327 kb on + strand, within HMPREF1058_RS00630at 29.465 kb on - strand, within HMPREF1058_RS00630at 29.510 kb on - strand, within HMPREF1058_RS00630at 29.534 kb on + strand, within HMPREF1058_RS00630at 29.567 kb on + strand, within HMPREF1058_RS00630at 29.609 kb on + strand, within HMPREF1058_RS00630at 29.649 kb on - strand, within HMPREF1058_RS00630at 29.775 kb on + strand, within HMPREF1058_RS00630at 29.825 kb on + strand, within HMPREF1058_RS00630at 29.850 kb on + strand, within HMPREF1058_RS00630at 29.857 kb on + strand, within HMPREF1058_RS00630at 29.858 kb on - strand, within HMPREF1058_RS00630at 29.861 kb on + strandat 29.861 kb on + strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 30.131 kb on + strandat 30.131 kb on + strandat 30.175 kb on + strandat 30.175 kb on + strandat 30.176 kb on - strandat 30.176 kb on - strandat 30.188 kb on - strandat 30.268 kb on - strandat 30.356 kb on + strand, within HMPREF1058_RS00625at 30.357 kb on - strand, within HMPREF1058_RS00625at 30.357 kb on - strand, within HMPREF1058_RS00625at 30.432 kb on + strand, within HMPREF1058_RS00625at 30.506 kb on + strand, within HMPREF1058_RS00625at 30.678 kb on - strand, within HMPREF1058_RS00625at 30.791 kb on + strand, within HMPREF1058_RS00625at 30.792 kb on - strand, within HMPREF1058_RS00625at 30.794 kb on - strand, within HMPREF1058_RS00625at 30.804 kb on + strand, within HMPREF1058_RS00625at 30.804 kb on + strand, within HMPREF1058_RS00625at 30.805 kb on - strand, within HMPREF1058_RS00625at 30.865 kb on + strand, within HMPREF1058_RS00625at 30.941 kb on + strand, within HMPREF1058_RS00625at 30.944 kb on + strand, within HMPREF1058_RS00625at 31.104 kb on + strand, within HMPREF1058_RS00625at 31.109 kb on + strand, within HMPREF1058_RS00625at 31.109 kb on + strand, within HMPREF1058_RS00625at 31.109 kb on + strand, within HMPREF1058_RS00625at 31.121 kb on + strand, within HMPREF1058_RS00625at 31.122 kb on - strandat 31.127 kb on + strand, within HMPREF1058_RS00625at 31.173 kb on + strand, within HMPREF1058_RS00625at 31.174 kb on - strand, within HMPREF1058_RS00625at 31.243 kb on - strandat 31.292 kb on - strandat 31.320 kb on - strandat 31.338 kb on + strandat 31.344 kb on - strandat 31.346 kb on - strandat 31.347 kb on + strandat 31.405 kb on + strandat 31.431 kb on - strandat 31.574 kb on + strand, within HMPREF1058_RS00620at 31.585 kb on + strand, within HMPREF1058_RS00620at 31.969 kb on - strand, within HMPREF1058_RS00620at 31.971 kb on - strand, within HMPREF1058_RS00620at 31.976 kb on + strandat 31.976 kb on + strand, within HMPREF1058_RS00620at 31.979 kb on - strand, within HMPREF1058_RS00620at 31.979 kb on - strand, within HMPREF1058_RS00620at 31.982 kb on + strand, within HMPREF1058_RS00620at 31.983 kb on - strand, within HMPREF1058_RS00620at 32.007 kb on - strand, within HMPREF1058_RS00620at 32.109 kb on + strand, within HMPREF1058_RS00620at 32.110 kb on - strand, within HMPREF1058_RS00620at 32.110 kb on - strand, within HMPREF1058_RS00620at 32.139 kb on - strand, within HMPREF1058_RS00620at 32.144 kb on - strand, within HMPREF1058_RS00620at 32.144 kb on - strand, within HMPREF1058_RS00620at 32.144 kb on - strand, within HMPREF1058_RS00620at 32.226 kb on + strand, within HMPREF1058_RS00620at 32.302 kb on + strand, within HMPREF1058_RS00620at 32.303 kb on - strand, within HMPREF1058_RS00620

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose 20 mM (C)
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29,158 - -1.8
29,298 + -3.4
29,298 + -2.6
29,299 - -4.9
29,299 - -2.1
29,299 - -2.2
29,299 - -3.1
29,302 + -5.9
29,303 - -5.8
29,327 + HMPREF1058_RS00630 0.10 -5.2
29,465 - HMPREF1058_RS00630 0.26 -6.0
29,510 - HMPREF1058_RS00630 0.31 -6.1
29,534 + HMPREF1058_RS00630 0.33 -4.5
29,567 + HMPREF1058_RS00630 0.37 -4.7
29,609 + HMPREF1058_RS00630 0.42 -4.7
29,649 - HMPREF1058_RS00630 0.46 -1.9
29,775 + HMPREF1058_RS00630 0.60 -4.6
29,825 + HMPREF1058_RS00630 0.66 -1.5
29,850 + HMPREF1058_RS00630 0.69 -4.8
29,857 + HMPREF1058_RS00630 0.70 -4.6
29,858 - HMPREF1058_RS00630 0.70 -3.8
29,861 + +0.5
29,861 + HMPREF1058_RS00630 0.70 -3.0
29,862 - HMPREF1058_RS00630 0.70 -3.5
29,862 - HMPREF1058_RS00630 0.70 -3.3
29,862 - HMPREF1058_RS00630 0.70 -3.6
29,862 - HMPREF1058_RS00630 0.70 -2.6
29,862 - HMPREF1058_RS00630 0.70 -3.1
29,862 - HMPREF1058_RS00630 0.70 -4.1
30,131 + -4.4
30,131 + -3.8
30,175 + -3.0
30,175 + -2.6
30,176 - -5.0
30,176 - -4.7
30,188 - -5.3
30,268 - -5.0
30,356 + HMPREF1058_RS00625 0.17 -3.6
30,357 - HMPREF1058_RS00625 0.18 -5.1
30,357 - HMPREF1058_RS00625 0.18 -5.3
30,432 + HMPREF1058_RS00625 0.24 -2.5
30,506 + HMPREF1058_RS00625 0.30 -3.1
30,678 - HMPREF1058_RS00625 0.45 -4.3
30,791 + HMPREF1058_RS00625 0.55 -5.1
30,792 - HMPREF1058_RS00625 0.55 -3.4
30,794 - HMPREF1058_RS00625 0.55 -3.2
30,804 + HMPREF1058_RS00625 0.56 -4.5
30,804 + HMPREF1058_RS00625 0.56 -5.6
30,805 - HMPREF1058_RS00625 0.56 -3.5
30,865 + HMPREF1058_RS00625 0.61 -3.5
30,941 + HMPREF1058_RS00625 0.68 -3.3
30,944 + HMPREF1058_RS00625 0.68 -2.9
31,104 + HMPREF1058_RS00625 0.82 -4.8
31,109 + HMPREF1058_RS00625 0.82 -2.5
31,109 + HMPREF1058_RS00625 0.82 -3.2
31,109 + HMPREF1058_RS00625 0.82 -5.5
31,121 + HMPREF1058_RS00625 0.83 -3.0
31,122 - -0.5
31,127 + HMPREF1058_RS00625 0.84 -3.8
31,173 + HMPREF1058_RS00625 0.88 -1.1
31,174 - HMPREF1058_RS00625 0.88 -6.0
31,243 - -4.6
31,292 - -3.6
31,320 - -4.0
31,338 + -5.3
31,344 - -4.1
31,346 - -4.0
31,347 + -2.6
31,405 + -4.3
31,431 - -4.4
31,574 + HMPREF1058_RS00620 0.13 -4.2
31,585 + HMPREF1058_RS00620 0.14 -1.9
31,969 - HMPREF1058_RS00620 0.34 -2.1
31,971 - HMPREF1058_RS00620 0.34 -3.5
31,976 + -0.8
31,976 + HMPREF1058_RS00620 0.34 -3.5
31,979 - HMPREF1058_RS00620 0.35 -3.4
31,979 - HMPREF1058_RS00620 0.35 -3.8
31,982 + HMPREF1058_RS00620 0.35 -5.1
31,983 - HMPREF1058_RS00620 0.35 -4.5
32,007 - HMPREF1058_RS00620 0.36 -3.2
32,109 + HMPREF1058_RS00620 0.41 -3.2
32,110 - HMPREF1058_RS00620 0.41 -5.0
32,110 - HMPREF1058_RS00620 0.41 -3.2
32,139 - HMPREF1058_RS00620 0.43 -4.0
32,144 - HMPREF1058_RS00620 0.43 -4.0
32,144 - HMPREF1058_RS00620 0.43 -4.6
32,144 - HMPREF1058_RS00620 0.43 -5.2
32,226 + HMPREF1058_RS00620 0.48 -3.3
32,302 + HMPREF1058_RS00620 0.52 -4.5
32,303 - HMPREF1058_RS00620 0.52 -5.8

Or see this region's nucleotide sequence