Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06209

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06208 and H281DRAFT_06209 are separated by 40 nucleotidesH281DRAFT_06209 and H281DRAFT_06210 overlap by 4 nucleotides H281DRAFT_06208: H281DRAFT_06208 - Sugar phosphate permease, at 100,578 to 101,780 _06208 H281DRAFT_06209: H281DRAFT_06209 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 101,821 to 102,693 _06209 H281DRAFT_06210: H281DRAFT_06210 - aconitate hydratase, at 102,690 to 105,386 _06210 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1at 100.823 kb on - strand, within H281DRAFT_06208at 100.840 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.899 kb on - strand, within H281DRAFT_06208at 100.900 kb on + strand, within H281DRAFT_06208at 100.908 kb on - strand, within H281DRAFT_06208at 100.908 kb on - strand, within H281DRAFT_06208at 100.909 kb on + strand, within H281DRAFT_06208at 100.910 kb on - strand, within H281DRAFT_06208at 100.910 kb on - strand, within H281DRAFT_06208at 100.929 kb on + strand, within H281DRAFT_06208at 100.929 kb on + strand, within H281DRAFT_06208at 100.930 kb on - strand, within H281DRAFT_06208at 100.933 kb on + strand, within H281DRAFT_06208at 101.021 kb on + strand, within H281DRAFT_06208at 101.022 kb on - strand, within H281DRAFT_06208at 101.023 kb on + strand, within H281DRAFT_06208at 101.024 kb on - strand, within H281DRAFT_06208at 101.253 kb on + strand, within H281DRAFT_06208at 101.265 kb on + strand, within H281DRAFT_06208at 101.643 kb on + strand, within H281DRAFT_06208at 101.713 kb on - strandat 101.775 kb on - strandat 101.855 kb on + strandat 101.856 kb on - strandat 101.920 kb on + strand, within H281DRAFT_06209at 101.920 kb on + strand, within H281DRAFT_06209at 101.921 kb on - strand, within H281DRAFT_06209at 101.970 kb on + strand, within H281DRAFT_06209at 101.970 kb on + strand, within H281DRAFT_06209at 101.971 kb on - strand, within H281DRAFT_06209at 101.971 kb on - strand, within H281DRAFT_06209at 102.041 kb on - strand, within H281DRAFT_06209at 102.298 kb on + strand, within H281DRAFT_06209at 102.453 kb on + strand, within H281DRAFT_06209at 102.454 kb on - strand, within H281DRAFT_06209at 102.454 kb on - strand, within H281DRAFT_06209at 102.484 kb on - strand, within H281DRAFT_06209at 102.540 kb on - strand, within H281DRAFT_06209at 102.540 kb on - strand, within H281DRAFT_06209at 102.543 kb on + strand, within H281DRAFT_06209at 102.750 kb on + strandat 103.397 kb on + strand, within H281DRAFT_06210at 103.397 kb on + strand, within H281DRAFT_06210at 103.397 kb on + strandat 103.398 kb on - strand, within H281DRAFT_06210at 103.398 kb on - strand, within H281DRAFT_06210at 103.398 kb on - strand, within H281DRAFT_06210at 103.398 kb on - strand, within H281DRAFT_06210at 103.427 kb on + strand, within H281DRAFT_06210at 103.428 kb on - strand, within H281DRAFT_06210at 103.451 kb on + strand, within H281DRAFT_06210at 103.452 kb on - strand, within H281DRAFT_06210at 103.455 kb on - strand, within H281DRAFT_06210at 103.513 kb on + strand, within H281DRAFT_06210at 103.600 kb on + strand, within H281DRAFT_06210at 103.601 kb on - strand, within H281DRAFT_06210at 103.601 kb on - strand, within H281DRAFT_06210at 103.601 kb on - strand, within H281DRAFT_06210

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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100,823 - H281DRAFT_06208 0.20 +0.3
100,840 + H281DRAFT_06208 0.22 +0.6
100,898 + H281DRAFT_06208 0.27 +0.6
100,898 + H281DRAFT_06208 0.27 +0.6
100,898 + H281DRAFT_06208 0.27 +0.6
100,899 - H281DRAFT_06208 0.27 +0.2
100,900 + H281DRAFT_06208 0.27 -0.0
100,908 - H281DRAFT_06208 0.27 -0.3
100,908 - H281DRAFT_06208 0.27 +0.7
100,909 + H281DRAFT_06208 0.28 +0.7
100,910 - H281DRAFT_06208 0.28 -1.2
100,910 - H281DRAFT_06208 0.28 -0.5
100,929 + H281DRAFT_06208 0.29 +0.4
100,929 + H281DRAFT_06208 0.29 -0.0
100,930 - H281DRAFT_06208 0.29 +0.4
100,933 + H281DRAFT_06208 0.30 +0.4
101,021 + H281DRAFT_06208 0.37 +1.4
101,022 - H281DRAFT_06208 0.37 +0.3
101,023 + H281DRAFT_06208 0.37 +0.1
101,024 - H281DRAFT_06208 0.37 -0.5
101,253 + H281DRAFT_06208 0.56 +0.5
101,265 + H281DRAFT_06208 0.57 +0.8
101,643 + H281DRAFT_06208 0.89 -0.3
101,713 - +0.6
101,775 - +0.3
101,855 + -0.1
101,856 - +0.0
101,920 + H281DRAFT_06209 0.11 -0.3
101,920 + H281DRAFT_06209 0.11 -1.0
101,921 - H281DRAFT_06209 0.11 -2.2
101,970 + H281DRAFT_06209 0.17 -0.2
101,970 + H281DRAFT_06209 0.17 -0.1
101,971 - H281DRAFT_06209 0.17 -0.5
101,971 - H281DRAFT_06209 0.17 +0.1
102,041 - H281DRAFT_06209 0.25 -0.7
102,298 + H281DRAFT_06209 0.55 -0.2
102,453 + H281DRAFT_06209 0.72 -0.1
102,454 - H281DRAFT_06209 0.73 -0.1
102,454 - H281DRAFT_06209 0.73 -0.1
102,484 - H281DRAFT_06209 0.76 -0.9
102,540 - H281DRAFT_06209 0.82 +1.5
102,540 - H281DRAFT_06209 0.82 +0.6
102,543 + H281DRAFT_06209 0.83 -0.3
102,750 + -0.5
103,397 + H281DRAFT_06210 0.26 -0.0
103,397 + H281DRAFT_06210 0.26 -1.0
103,397 + -0.5
103,398 - H281DRAFT_06210 0.26 +0.7
103,398 - H281DRAFT_06210 0.26 +0.1
103,398 - H281DRAFT_06210 0.26 -1.1
103,398 - H281DRAFT_06210 0.26 -0.2
103,427 + H281DRAFT_06210 0.27 +0.3
103,428 - H281DRAFT_06210 0.27 +0.3
103,451 + H281DRAFT_06210 0.28 +1.4
103,452 - H281DRAFT_06210 0.28 -0.0
103,455 - H281DRAFT_06210 0.28 -0.3
103,513 + H281DRAFT_06210 0.31 +0.5
103,600 + H281DRAFT_06210 0.34 -0.1
103,601 - H281DRAFT_06210 0.34 -0.2
103,601 - H281DRAFT_06210 0.34 +1.5
103,601 - H281DRAFT_06210 0.34 +0.2

Or see this region's nucleotide sequence