Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00645

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00644 and H281DRAFT_00645 are separated by 281 nucleotidesH281DRAFT_00645 and H281DRAFT_00646 are separated by 44 nucleotides H281DRAFT_00644: H281DRAFT_00644 - 2-deoxy-D-ribonate 3-dehydrogenase (from data), at 722,314 to 723,105 _00644 H281DRAFT_00645: H281DRAFT_00645 - hypothetical protein, at 723,387 to 723,794 _00645 H281DRAFT_00646: H281DRAFT_00646 - transcriptional regulator, AraC family, at 723,839 to 724,696 _00646 Position (kb) 723 724Strain fitness (log2 ratio) -1 0 1at 722.434 kb on - strand, within H281DRAFT_00644at 722.608 kb on - strand, within H281DRAFT_00644at 722.649 kb on + strand, within H281DRAFT_00644at 722.650 kb on - strand, within H281DRAFT_00644at 722.650 kb on - strand, within H281DRAFT_00644at 723.097 kb on + strandat 723.101 kb on + strandat 723.102 kb on - strandat 723.102 kb on - strandat 723.174 kb on - strandat 723.174 kb on - strandat 723.326 kb on - strandat 723.541 kb on + strand, within H281DRAFT_00645at 723.633 kb on + strand, within H281DRAFT_00645at 723.671 kb on - strand, within H281DRAFT_00645at 723.729 kb on + strand, within H281DRAFT_00645at 724.017 kb on + strand, within H281DRAFT_00646at 724.017 kb on + strand, within H281DRAFT_00646at 724.169 kb on - strand, within H281DRAFT_00646at 724.270 kb on - strand, within H281DRAFT_00646at 724.328 kb on - strand, within H281DRAFT_00646at 724.410 kb on + strand, within H281DRAFT_00646at 724.410 kb on + strand, within H281DRAFT_00646at 724.411 kb on - strand, within H281DRAFT_00646at 724.535 kb on + strand, within H281DRAFT_00646at 724.536 kb on - strand, within H281DRAFT_00646at 724.702 kb on - strandat 724.702 kb on - strandat 724.702 kb on - strandat 724.741 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
722,434 - H281DRAFT_00644 0.15 -0.1
722,608 - H281DRAFT_00644 0.37 -1.3
722,649 + H281DRAFT_00644 0.42 +0.9
722,650 - H281DRAFT_00644 0.42 -0.7
722,650 - H281DRAFT_00644 0.42 +0.8
723,097 + -0.3
723,101 + -0.0
723,102 - +0.6
723,102 - +0.1
723,174 - -0.5
723,174 - -0.5
723,326 - +0.4
723,541 + H281DRAFT_00645 0.38 +0.3
723,633 + H281DRAFT_00645 0.60 -0.0
723,671 - H281DRAFT_00645 0.70 +1.2
723,729 + H281DRAFT_00645 0.84 +1.7
724,017 + H281DRAFT_00646 0.21 +0.8
724,017 + H281DRAFT_00646 0.21 -1.3
724,169 - H281DRAFT_00646 0.38 +0.6
724,270 - H281DRAFT_00646 0.50 +0.8
724,328 - H281DRAFT_00646 0.57 +0.8
724,410 + H281DRAFT_00646 0.67 -0.5
724,410 + H281DRAFT_00646 0.67 -0.2
724,411 - H281DRAFT_00646 0.67 +0.2
724,535 + H281DRAFT_00646 0.81 -0.3
724,536 - H281DRAFT_00646 0.81 +0.8
724,702 - -0.9
724,702 - +0.2
724,702 - -0.6
724,741 - -0.2

Or see this region's nucleotide sequence