Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00522

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00520 and H281DRAFT_00521 are separated by 143 nucleotidesH281DRAFT_00521 and H281DRAFT_00522 are separated by 31 nucleotidesH281DRAFT_00522 and H281DRAFT_00523 are separated by 47 nucleotides H281DRAFT_00520: H281DRAFT_00520 - GTP-binding protein, at 582,214 to 583,551 _00520 H281DRAFT_00521: H281DRAFT_00521 - RNA-binding protein Hfq, at 583,695 to 583,931 _00521 H281DRAFT_00522: H281DRAFT_00522 - GTP-binding protein HflX, at 583,963 to 585,177 _00522 H281DRAFT_00523: H281DRAFT_00523 - protease FtsH subunit HflK, at 585,225 to 586,619 _00523 Position (kb) 583 584 585 586Strain fitness (log2 ratio) -2 -1 0 1at 583.617 kb on + strandat 583.639 kb on + strandat 583.663 kb on + strandat 583.929 kb on + strandat 584.109 kb on - strand, within H281DRAFT_00522at 584.375 kb on - strand, within H281DRAFT_00522at 584.375 kb on - strandat 584.599 kb on - strand, within H281DRAFT_00522at 584.996 kb on - strand, within H281DRAFT_00522at 585.000 kb on + strand, within H281DRAFT_00522at 585.000 kb on + strand, within H281DRAFT_00522at 585.001 kb on - strand, within H281DRAFT_00522at 585.205 kb on - strandat 586.101 kb on + strand, within H281DRAFT_00523

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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583,617 + +0.0
583,639 + -0.5
583,663 + +0.4
583,929 + -0.1
584,109 - H281DRAFT_00522 0.12 +0.5
584,375 - H281DRAFT_00522 0.34 +0.2
584,375 - +0.7
584,599 - H281DRAFT_00522 0.52 +1.0
584,996 - H281DRAFT_00522 0.85 +1.5
585,000 + H281DRAFT_00522 0.85 +0.8
585,000 + H281DRAFT_00522 0.85 +0.5
585,001 - H281DRAFT_00522 0.85 -2.6
585,205 - -0.7
586,101 + H281DRAFT_00523 0.63 +0.9

Or see this region's nucleotide sequence