Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0842

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0840 and Ga0059261_0841 overlap by 1 nucleotidesGa0059261_0841 and Ga0059261_0842 are separated by 30 nucleotidesGa0059261_0842 and Ga0059261_0843 are separated by 52 nucleotidesGa0059261_0843 and Ga0059261_0844 overlap by 1 nucleotides Ga0059261_0840: Ga0059261_0840 - Acyl-CoA dehydrogenases, at 880,429 to 881,556 _0840 Ga0059261_0841: Ga0059261_0841 - Acyl-CoA thioesterase, at 881,556 to 882,443 _0841 Ga0059261_0842: Ga0059261_0842 - TonB family C-terminal domain, at 882,474 to 883,580 _0842 Ga0059261_0843: Ga0059261_0843 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 883,633 to 884,433 _0843 Ga0059261_0844: Ga0059261_0844 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 884,433 to 885,197 _0844 Position (kb) 882 883 884Strain fitness (log2 ratio) -2 -1 0 1 2at 881.551 kb on + strandat 881.649 kb on + strand, within Ga0059261_0841at 881.649 kb on + strand, within Ga0059261_0841at 881.650 kb on - strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.809 kb on - strand, within Ga0059261_0841at 882.117 kb on + strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strandat 882.183 kb on + strand, within Ga0059261_0841at 882.183 kb on + strand, within Ga0059261_0841at 882.183 kb on + strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.321 kb on + strand, within Ga0059261_0841at 882.321 kb on + strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.630 kb on + strand, within Ga0059261_0842at 882.631 kb on - strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.670 kb on + strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.671 kb on - strand, within Ga0059261_0842at 882.735 kb on + strand, within Ga0059261_0842at 882.736 kb on - strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.844 kb on + strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.845 kb on - strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.850 kb on + strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strand, within Ga0059261_0842at 882.851 kb on - strandat 882.926 kb on + strand, within Ga0059261_0842at 882.926 kb on + strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 882.927 kb on - strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.000 kb on + strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.001 kb on - strand, within Ga0059261_0842at 883.303 kb on + strand, within Ga0059261_0842at 883.304 kb on - strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strandat 883.399 kb on + strandat 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.399 kb on + strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.400 kb on - strand, within Ga0059261_0842at 883.403 kb on + strand, within Ga0059261_0842at 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.565 kb on + strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.566 kb on - strandat 883.653 kb on - strandat 883.721 kb on + strand, within Ga0059261_0843at 883.721 kb on + strand, within Ga0059261_0843at 883.721 kb on + strand, within Ga0059261_0843at 883.721 kb on + strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strandat 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.722 kb on - strand, within Ga0059261_0843at 883.970 kb on + strand, within Ga0059261_0843at 883.971 kb on - strand, within Ga0059261_0843at 883.980 kb on + strand, within Ga0059261_0843at 884.139 kb on + strand, within Ga0059261_0843at 884.140 kb on - strand, within Ga0059261_0843at 884.140 kb on - strand, within Ga0059261_0843at 884.140 kb on - strand, within Ga0059261_0843at 884.195 kb on + strand, within Ga0059261_0843at 884.195 kb on + strand, within Ga0059261_0843at 884.196 kb on - strand, within Ga0059261_0843at 884.401 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.479 kb on + strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.480 kb on - strandat 884.503 kb on + strandat 884.503 kb on + strandat 884.503 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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881,551 + -0.3
881,649 + Ga0059261_0841 0.10 -0.4
881,649 + Ga0059261_0841 0.10 -0.1
881,650 - Ga0059261_0841 0.11 -0.2
881,769 + Ga0059261_0841 0.24 +0.2
881,769 + Ga0059261_0841 0.24 -1.0
881,769 + Ga0059261_0841 0.24 -0.4
881,769 + Ga0059261_0841 0.24 +0.4
881,770 - Ga0059261_0841 0.24 -1.6
881,770 - Ga0059261_0841 0.24 +0.3
881,770 - Ga0059261_0841 0.24 -0.0
881,808 + Ga0059261_0841 0.28 -0.2
881,808 + Ga0059261_0841 0.28 -0.3
881,808 + Ga0059261_0841 0.28 +0.4
881,809 - Ga0059261_0841 0.28 +0.2
882,117 + Ga0059261_0841 0.63 +0.2
882,118 - Ga0059261_0841 0.63 +0.5
882,118 - Ga0059261_0841 0.63 +0.3
882,118 - Ga0059261_0841 0.63 -0.7
882,118 - -0.2
882,183 + Ga0059261_0841 0.71 +0.0
882,183 + Ga0059261_0841 0.71 +0.6
882,183 + Ga0059261_0841 0.71 +0.8
882,184 - Ga0059261_0841 0.71 -0.4
882,184 - Ga0059261_0841 0.71 -1.3
882,184 - Ga0059261_0841 0.71 -0.5
882,184 - Ga0059261_0841 0.71 +0.2
882,321 + Ga0059261_0841 0.86 -0.6
882,321 + Ga0059261_0841 0.86 -0.1
882,322 - Ga0059261_0841 0.86 -0.6
882,322 - Ga0059261_0841 0.86 +0.4
882,322 - Ga0059261_0841 0.86 +0.1
882,630 + Ga0059261_0842 0.14 +0.6
882,630 + Ga0059261_0842 0.14 +0.4
882,630 + Ga0059261_0842 0.14 -1.0
882,630 + Ga0059261_0842 0.14 +0.7
882,630 + Ga0059261_0842 0.14 -0.9
882,631 - Ga0059261_0842 0.14 +0.3
882,670 + Ga0059261_0842 0.18 -2.1
882,670 + Ga0059261_0842 0.18 +0.4
882,670 + Ga0059261_0842 0.18 +0.0
882,670 + Ga0059261_0842 0.18 -0.0
882,670 + Ga0059261_0842 0.18 -1.1
882,671 - Ga0059261_0842 0.18 -0.1
882,671 - Ga0059261_0842 0.18 +0.6
882,671 - Ga0059261_0842 0.18 +0.2
882,671 - Ga0059261_0842 0.18 -0.6
882,735 + Ga0059261_0842 0.24 +1.4
882,736 - Ga0059261_0842 0.24 -0.1
882,844 + Ga0059261_0842 0.33 -0.5
882,844 + Ga0059261_0842 0.33 +0.8
882,844 + Ga0059261_0842 0.33 -0.8
882,844 + Ga0059261_0842 0.33 +0.8
882,845 - Ga0059261_0842 0.34 -1.1
882,845 - Ga0059261_0842 0.34 -0.2
882,845 - Ga0059261_0842 0.34 -0.3
882,850 + Ga0059261_0842 0.34 -1.0
882,850 + Ga0059261_0842 0.34 -0.6
882,850 + Ga0059261_0842 0.34 -0.3
882,850 + Ga0059261_0842 0.34 -0.2
882,850 + Ga0059261_0842 0.34 -0.3
882,850 + Ga0059261_0842 0.34 +0.9
882,851 - Ga0059261_0842 0.34 -1.7
882,851 - Ga0059261_0842 0.34 -0.3
882,851 - Ga0059261_0842 0.34 -1.0
882,851 - Ga0059261_0842 0.34 +0.4
882,851 - +0.4
882,926 + Ga0059261_0842 0.41 +0.1
882,926 + Ga0059261_0842 0.41 -0.3
882,927 - Ga0059261_0842 0.41 +0.4
882,927 - Ga0059261_0842 0.41 -0.4
882,927 - Ga0059261_0842 0.41 +0.7
882,927 - Ga0059261_0842 0.41 -0.3
883,000 + Ga0059261_0842 0.48 +0.3
883,000 + Ga0059261_0842 0.48 -1.1
883,000 + Ga0059261_0842 0.48 +0.9
883,000 + Ga0059261_0842 0.48 +0.1
883,000 + Ga0059261_0842 0.48 -0.4
883,001 - Ga0059261_0842 0.48 -0.1
883,001 - Ga0059261_0842 0.48 +0.3
883,001 - Ga0059261_0842 0.48 -0.8
883,001 - Ga0059261_0842 0.48 -0.2
883,001 - Ga0059261_0842 0.48 -2.0
883,303 + Ga0059261_0842 0.75 -0.6
883,304 - Ga0059261_0842 0.75 +2.0
883,399 + Ga0059261_0842 0.84 -0.3
883,399 + Ga0059261_0842 0.84 -1.3
883,399 + Ga0059261_0842 0.84 -0.7
883,399 + Ga0059261_0842 0.84 +0.2
883,399 + Ga0059261_0842 0.84 -0.2
883,399 + Ga0059261_0842 0.84 -0.6
883,399 + Ga0059261_0842 0.84 +0.3
883,399 + -0.6
883,399 + +0.0
883,399 + Ga0059261_0842 0.84 -0.1
883,399 + Ga0059261_0842 0.84 +0.4
883,399 + Ga0059261_0842 0.84 +0.3
883,400 - Ga0059261_0842 0.84 +0.1
883,400 - Ga0059261_0842 0.84 +0.2
883,400 - Ga0059261_0842 0.84 -0.1
883,400 - Ga0059261_0842 0.84 +0.0
883,400 - Ga0059261_0842 0.84 -0.5
883,400 - Ga0059261_0842 0.84 -0.7
883,400 - Ga0059261_0842 0.84 -0.8
883,403 + Ga0059261_0842 0.84 -0.1
883,565 + +0.0
883,565 + +0.8
883,565 + +0.2
883,565 + -0.1
883,565 + +0.2
883,565 + +0.5
883,565 + +0.0
883,565 + -1.7
883,566 - -0.6
883,566 - +0.0
883,566 - -0.6
883,566 - +0.8
883,566 - -1.4
883,566 - -1.0
883,566 - -0.1
883,566 - -2.0
883,566 - +0.6
883,653 - -0.8
883,721 + Ga0059261_0843 0.11 +0.1
883,721 + Ga0059261_0843 0.11 -0.7
883,721 + Ga0059261_0843 0.11 +0.4
883,721 + Ga0059261_0843 0.11 -1.0
883,722 - Ga0059261_0843 0.11 -0.6
883,722 - Ga0059261_0843 0.11 +0.3
883,722 - Ga0059261_0843 0.11 -0.8
883,722 - +1.4
883,722 - Ga0059261_0843 0.11 -1.0
883,722 - Ga0059261_0843 0.11 -0.6
883,722 - Ga0059261_0843 0.11 -0.1
883,722 - Ga0059261_0843 0.11 -0.5
883,722 - Ga0059261_0843 0.11 +1.5
883,722 - Ga0059261_0843 0.11 +0.6
883,970 + Ga0059261_0843 0.42 +0.9
883,971 - Ga0059261_0843 0.42 -0.4
883,980 + Ga0059261_0843 0.43 -0.9
884,139 + Ga0059261_0843 0.63 -0.6
884,140 - Ga0059261_0843 0.63 +0.4
884,140 - Ga0059261_0843 0.63 +0.4
884,140 - Ga0059261_0843 0.63 -0.4
884,195 + Ga0059261_0843 0.70 +0.4
884,195 + Ga0059261_0843 0.70 +0.1
884,196 - Ga0059261_0843 0.70 -0.8
884,401 + +0.4
884,479 + +1.8
884,479 + +0.8
884,479 + -0.6
884,479 + -1.3
884,479 + +0.8
884,479 + +0.4
884,480 - +0.4
884,480 - -0.8
884,480 - -0.1
884,480 - +0.2
884,480 - -0.3
884,480 - -1.0
884,480 - +0.3
884,503 + +0.7
884,503 + -1.4
884,503 + -0.1

Or see this region's nucleotide sequence