Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03838

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03836 and CCNA_03837 are separated by 70 nucleotidesCCNA_03837 and CCNA_03838 are separated by 72 nucleotidesCCNA_03838 and CCNA_03839 are separated by 95 nucleotides CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472 _03836 CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088 _03837 CCNA_03838: CCNA_03838 - gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase, at 4,003,161 to 4,004,147 _03838 CCNA_03839: CCNA_03839 - acylamino-acid-releasing enzyme, at 4,004,243 to 4,006,246 _03839 Position (kb) 4003 4004 4005Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4002.509 kb on + strandat 4002.517 kb on - strandat 4002.532 kb on - strandat 4003.044 kb on + strandat 4003.052 kb on - strandat 4003.052 kb on - strandat 4003.075 kb on + strandat 4003.083 kb on - strandat 4003.083 kb on - strandat 4003.092 kb on + strandat 4003.094 kb on - strandat 4003.102 kb on + strandat 4003.105 kb on - strandat 4003.129 kb on - strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.165 kb on - strandat 4003.190 kb on - strandat 4003.192 kb on + strandat 4003.233 kb on + strandat 4003.243 kb on - strandat 4003.262 kb on - strand, within CCNA_03838at 4003.265 kb on + strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.380 kb on - strand, within CCNA_03838at 4003.407 kb on + strand, within CCNA_03838at 4003.409 kb on - strand, within CCNA_03838at 4003.436 kb on - strand, within CCNA_03838at 4003.483 kb on + strand, within CCNA_03838at 4003.486 kb on - strand, within CCNA_03838at 4003.498 kb on - strand, within CCNA_03838at 4003.508 kb on + strand, within CCNA_03838at 4003.670 kb on + strand, within CCNA_03838at 4003.670 kb on + strand, within CCNA_03838at 4003.671 kb on - strand, within CCNA_03838at 4003.714 kb on + strand, within CCNA_03838at 4003.736 kb on + strand, within CCNA_03838at 4003.744 kb on - strand, within CCNA_03838at 4003.764 kb on - strand, within CCNA_03838at 4003.810 kb on + strand, within CCNA_03838at 4003.827 kb on - strand, within CCNA_03838at 4003.830 kb on - strand, within CCNA_03838at 4003.872 kb on + strand, within CCNA_03838at 4003.874 kb on + strand, within CCNA_03838at 4003.874 kb on + strand, within CCNA_03838at 4003.874 kb on + strand, within CCNA_03838at 4003.875 kb on - strand, within CCNA_03838at 4003.882 kb on - strand, within CCNA_03838at 4003.882 kb on - strand, within CCNA_03838at 4003.882 kb on - strand, within CCNA_03838at 4003.889 kb on + strand, within CCNA_03838at 4003.936 kb on - strand, within CCNA_03838at 4003.936 kb on - strand, within CCNA_03838at 4003.943 kb on + strand, within CCNA_03838at 4003.996 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.006 kb on + strand, within CCNA_03838at 4004.011 kb on + strand, within CCNA_03838at 4004.014 kb on - strand, within CCNA_03838at 4004.014 kb on - strand, within CCNA_03838at 4004.019 kb on + strand, within CCNA_03838at 4004.028 kb on + strand, within CCNA_03838at 4004.046 kb on + strand, within CCNA_03838at 4004.054 kb on - strandat 4004.095 kb on + strandat 4004.103 kb on - strandat 4004.111 kb on - strandat 4004.141 kb on + strandat 4004.161 kb on - strandat 4004.161 kb on - strandat 4004.170 kb on - strandat 4004.218 kb on + strandat 4004.226 kb on - strandat 4004.233 kb on + strandat 4004.233 kb on + strandat 4004.246 kb on - strandat 4004.293 kb on + strandat 4004.315 kb on + strandat 4004.315 kb on + strandat 4004.327 kb on + strandat 4004.328 kb on - strandat 4004.328 kb on - strandat 4004.335 kb on - strandat 4004.337 kb on + strandat 4004.337 kb on + strandat 4004.364 kb on + strandat 4004.403 kb on - strandat 4004.451 kb on - strand, within CCNA_03839at 4004.451 kb on - strand, within CCNA_03839at 4004.482 kb on + strand, within CCNA_03839at 4004.528 kb on + strand, within CCNA_03839at 4004.530 kb on - strand, within CCNA_03839at 4004.554 kb on - strand, within CCNA_03839at 4004.563 kb on + strand, within CCNA_03839at 4004.563 kb on + strand, within CCNA_03839at 4004.573 kb on - strand, within CCNA_03839at 4004.624 kb on - strand, within CCNA_03839at 4004.651 kb on + strand, within CCNA_03839at 4004.659 kb on - strand, within CCNA_03839at 4004.672 kb on + strand, within CCNA_03839at 4004.682 kb on + strand, within CCNA_03839at 4004.682 kb on + strand, within CCNA_03839at 4004.682 kb on + strand, within CCNA_03839at 4004.703 kb on + strand, within CCNA_03839at 4004.709 kb on - strand, within CCNA_03839at 4004.720 kb on + strand, within CCNA_03839at 4004.739 kb on + strand, within CCNA_03839at 4004.776 kb on + strand, within CCNA_03839at 4004.776 kb on + strand, within CCNA_03839at 4004.776 kb on + strand, within CCNA_03839at 4004.784 kb on - strand, within CCNA_03839at 4004.784 kb on - strand, within CCNA_03839at 4004.836 kb on - strand, within CCNA_03839at 4004.849 kb on - strand, within CCNA_03839at 4004.883 kb on + strand, within CCNA_03839at 4004.913 kb on + strand, within CCNA_03839at 4004.937 kb on - strand, within CCNA_03839at 4004.956 kb on - strand, within CCNA_03839at 4004.956 kb on - strand, within CCNA_03839at 4005.042 kb on - strand, within CCNA_03839at 4005.052 kb on + strand, within CCNA_03839at 4005.052 kb on + strand, within CCNA_03839at 4005.057 kb on + strand, within CCNA_03839at 4005.065 kb on - strand, within CCNA_03839at 4005.088 kb on + strand, within CCNA_03839at 4005.097 kb on - strand, within CCNA_03839at 4005.111 kb on + strand, within CCNA_03839at 4005.119 kb on - strand, within CCNA_03839at 4005.134 kb on - strand, within CCNA_03839at 4005.134 kb on - strand, within CCNA_03839at 4005.136 kb on + strand, within CCNA_03839at 4005.136 kb on + strand, within CCNA_03839at 4005.143 kb on + strand, within CCNA_03839at 4005.143 kb on + strand, within CCNA_03839at 4005.144 kb on - strand, within CCNA_03839at 4005.144 kb on - strand, within CCNA_03839at 4005.144 kb on - strand, within CCNA_03839

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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4,002,509 + -0.5
4,002,517 - -1.6
4,002,532 - -0.1
4,003,044 + +0.2
4,003,052 - -0.7
4,003,052 - +0.1
4,003,075 + -1.5
4,003,083 - -0.1
4,003,083 - -0.7
4,003,092 + +0.7
4,003,094 - -0.1
4,003,102 + -0.7
4,003,105 - -0.1
4,003,129 - +0.3
4,003,157 + -1.0
4,003,157 + +0.6
4,003,157 + -0.7
4,003,157 + +0.1
4,003,157 + +1.5
4,003,165 - +1.2
4,003,190 - +0.1
4,003,192 + -0.9
4,003,233 + -1.3
4,003,243 - -2.5
4,003,262 - CCNA_03838 0.10 +0.9
4,003,265 + CCNA_03838 0.11 +1.3
4,003,372 + CCNA_03838 0.21 -0.7
4,003,372 + CCNA_03838 0.21 -0.7
4,003,380 - CCNA_03838 0.22 +0.1
4,003,407 + CCNA_03838 0.25 +0.4
4,003,409 - CCNA_03838 0.25 +0.8
4,003,436 - CCNA_03838 0.28 +1.3
4,003,483 + CCNA_03838 0.33 +1.5
4,003,486 - CCNA_03838 0.33 +0.7
4,003,498 - CCNA_03838 0.34 -1.1
4,003,508 + CCNA_03838 0.35 +0.1
4,003,670 + CCNA_03838 0.52 +0.8
4,003,670 + CCNA_03838 0.52 +0.2
4,003,671 - CCNA_03838 0.52 -1.4
4,003,714 + CCNA_03838 0.56 +0.3
4,003,736 + CCNA_03838 0.58 +1.0
4,003,744 - CCNA_03838 0.59 -0.6
4,003,764 - CCNA_03838 0.61 -0.9
4,003,810 + CCNA_03838 0.66 +1.4
4,003,827 - CCNA_03838 0.67 -2.2
4,003,830 - CCNA_03838 0.68 +0.4
4,003,872 + CCNA_03838 0.72 +1.3
4,003,874 + CCNA_03838 0.72 +0.0
4,003,874 + CCNA_03838 0.72 +0.7
4,003,874 + CCNA_03838 0.72 +0.8
4,003,875 - CCNA_03838 0.72 +1.4
4,003,882 - CCNA_03838 0.73 +0.8
4,003,882 - CCNA_03838 0.73 -1.8
4,003,882 - CCNA_03838 0.73 -1.8
4,003,889 + CCNA_03838 0.74 +1.1
4,003,936 - CCNA_03838 0.79 -1.1
4,003,936 - CCNA_03838 0.79 +0.1
4,003,943 + CCNA_03838 0.79 +0.3
4,003,996 + CCNA_03838 0.85 +2.5
4,004,006 + CCNA_03838 0.86 +1.0
4,004,006 + CCNA_03838 0.86 +0.7
4,004,006 + CCNA_03838 0.86 +1.7
4,004,006 + CCNA_03838 0.86 +1.7
4,004,006 + CCNA_03838 0.86 +1.1
4,004,006 + CCNA_03838 0.86 +1.0
4,004,006 + CCNA_03838 0.86 +2.8
4,004,011 + CCNA_03838 0.86 +2.0
4,004,014 - CCNA_03838 0.86 -0.7
4,004,014 - CCNA_03838 0.86 +0.1
4,004,019 + CCNA_03838 0.87 +0.7
4,004,028 + CCNA_03838 0.88 +1.5
4,004,046 + CCNA_03838 0.90 +0.2
4,004,054 - -0.1
4,004,095 + +3.1
4,004,103 - -1.6
4,004,111 - -1.0
4,004,141 + -0.4
4,004,161 - +0.7
4,004,161 - -1.4
4,004,170 - -1.4
4,004,218 + +0.9
4,004,226 - +1.0
4,004,233 + +1.1
4,004,233 + +0.2
4,004,246 - -1.4
4,004,293 + +0.6
4,004,315 + +0.7
4,004,315 + +0.5
4,004,327 + -0.0
4,004,328 - -0.6
4,004,328 - -3.6
4,004,335 - -0.3
4,004,337 + +0.7
4,004,337 + -0.6
4,004,364 + -2.1
4,004,403 - -0.9
4,004,451 - CCNA_03839 0.10 +1.1
4,004,451 - CCNA_03839 0.10 -0.4
4,004,482 + CCNA_03839 0.12 -0.9
4,004,528 + CCNA_03839 0.14 +0.1
4,004,530 - CCNA_03839 0.14 -2.9
4,004,554 - CCNA_03839 0.16 +2.6
4,004,563 + CCNA_03839 0.16 -0.6
4,004,563 + CCNA_03839 0.16 +0.5
4,004,573 - CCNA_03839 0.16 -1.2
4,004,624 - CCNA_03839 0.19 -1.9
4,004,651 + CCNA_03839 0.20 -1.4
4,004,659 - CCNA_03839 0.21 -0.7
4,004,672 + CCNA_03839 0.21 -1.2
4,004,682 + CCNA_03839 0.22 -0.3
4,004,682 + CCNA_03839 0.22 -1.7
4,004,682 + CCNA_03839 0.22 -0.2
4,004,703 + CCNA_03839 0.23 -0.5
4,004,709 - CCNA_03839 0.23 +1.3
4,004,720 + CCNA_03839 0.24 -1.7
4,004,739 + CCNA_03839 0.25 +0.1
4,004,776 + CCNA_03839 0.27 -0.3
4,004,776 + CCNA_03839 0.27 +1.3
4,004,776 + CCNA_03839 0.27 +0.6
4,004,784 - CCNA_03839 0.27 +0.7
4,004,784 - CCNA_03839 0.27 +0.1
4,004,836 - CCNA_03839 0.30 +1.5
4,004,849 - CCNA_03839 0.30 -1.5
4,004,883 + CCNA_03839 0.32 -0.2
4,004,913 + CCNA_03839 0.33 +0.5
4,004,937 - CCNA_03839 0.35 -1.8
4,004,956 - CCNA_03839 0.36 -0.7
4,004,956 - CCNA_03839 0.36 +0.3
4,005,042 - CCNA_03839 0.40 -0.9
4,005,052 + CCNA_03839 0.40 +0.5
4,005,052 + CCNA_03839 0.40 -1.0
4,005,057 + CCNA_03839 0.41 -0.3
4,005,065 - CCNA_03839 0.41 +0.3
4,005,088 + CCNA_03839 0.42 +0.2
4,005,097 - CCNA_03839 0.43 +0.0
4,005,111 + CCNA_03839 0.43 -0.9
4,005,119 - CCNA_03839 0.44 -1.8
4,005,134 - CCNA_03839 0.44 -0.1
4,005,134 - CCNA_03839 0.44 +0.3
4,005,136 + CCNA_03839 0.45 -0.5
4,005,136 + CCNA_03839 0.45 +1.0
4,005,143 + CCNA_03839 0.45 -1.0
4,005,143 + CCNA_03839 0.45 -0.5
4,005,144 - CCNA_03839 0.45 -0.4
4,005,144 - CCNA_03839 0.45 +0.2
4,005,144 - CCNA_03839 0.45 -2.2

Or see this region's nucleotide sequence