Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03836 and CCNA_03837 are separated by 70 nucleotides CCNA_03837 and CCNA_03838 are separated by 72 nucleotides CCNA_03838 and CCNA_03839 are separated by 95 nucleotides
CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472
_03836
CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088
_03837
CCNA_03838: CCNA_03838 - gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase, at 4,003,161 to 4,004,147
_03838
CCNA_03839: CCNA_03839 - acylamino-acid-releasing enzyme, at 4,004,243 to 4,006,246
_03839
Position (kb)
4003
4004
4005 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4002.509 kb on + strand at 4002.517 kb on - strand at 4002.532 kb on - strand at 4003.044 kb on + strand at 4003.052 kb on - strand at 4003.052 kb on - strand at 4003.075 kb on + strand at 4003.083 kb on - strand at 4003.083 kb on - strand at 4003.092 kb on + strand at 4003.094 kb on - strand at 4003.102 kb on + strand at 4003.105 kb on - strand at 4003.129 kb on - strand at 4003.157 kb on + strand at 4003.157 kb on + strand at 4003.157 kb on + strand at 4003.157 kb on + strand at 4003.157 kb on + strand at 4003.165 kb on - strand at 4003.190 kb on - strand at 4003.192 kb on + strand at 4003.233 kb on + strand at 4003.243 kb on - strand at 4003.262 kb on - strand, within CCNA_03838 at 4003.265 kb on + strand, within CCNA_03838 at 4003.372 kb on + strand, within CCNA_03838 at 4003.372 kb on + strand, within CCNA_03838 at 4003.380 kb on - strand, within CCNA_03838 at 4003.407 kb on + strand, within CCNA_03838 at 4003.409 kb on - strand, within CCNA_03838 at 4003.436 kb on - strand, within CCNA_03838 at 4003.483 kb on + strand, within CCNA_03838 at 4003.486 kb on - strand, within CCNA_03838 at 4003.498 kb on - strand, within CCNA_03838 at 4003.508 kb on + strand, within CCNA_03838 at 4003.670 kb on + strand, within CCNA_03838 at 4003.670 kb on + strand, within CCNA_03838 at 4003.671 kb on - strand, within CCNA_03838 at 4003.714 kb on + strand, within CCNA_03838 at 4003.736 kb on + strand, within CCNA_03838 at 4003.744 kb on - strand, within CCNA_03838 at 4003.764 kb on - strand, within CCNA_03838 at 4003.810 kb on + strand, within CCNA_03838 at 4003.827 kb on - strand, within CCNA_03838 at 4003.830 kb on - strand, within CCNA_03838 at 4003.872 kb on + strand, within CCNA_03838 at 4003.874 kb on + strand, within CCNA_03838 at 4003.874 kb on + strand, within CCNA_03838 at 4003.874 kb on + strand, within CCNA_03838 at 4003.875 kb on - strand, within CCNA_03838 at 4003.882 kb on - strand, within CCNA_03838 at 4003.882 kb on - strand, within CCNA_03838 at 4003.882 kb on - strand, within CCNA_03838 at 4003.889 kb on + strand, within CCNA_03838 at 4003.936 kb on - strand, within CCNA_03838 at 4003.936 kb on - strand, within CCNA_03838 at 4003.943 kb on + strand, within CCNA_03838 at 4003.996 kb on + strand, within CCNA_03838 at 4004.006 kb on + strand, within CCNA_03838 at 4004.006 kb on + strand, within CCNA_03838 at 4004.006 kb on + strand, within CCNA_03838 at 4004.006 kb on + strand, within CCNA_03838 at 4004.006 kb on + strand, within CCNA_03838 at 4004.006 kb on + strand, within CCNA_03838 at 4004.006 kb on + strand, within CCNA_03838 at 4004.011 kb on + strand, within CCNA_03838 at 4004.014 kb on - strand, within CCNA_03838 at 4004.014 kb on - strand, within CCNA_03838 at 4004.019 kb on + strand, within CCNA_03838 at 4004.028 kb on + strand, within CCNA_03838 at 4004.046 kb on + strand, within CCNA_03838 at 4004.054 kb on - strand at 4004.095 kb on + strand at 4004.103 kb on - strand at 4004.111 kb on - strand at 4004.141 kb on + strand at 4004.161 kb on - strand at 4004.161 kb on - strand at 4004.170 kb on - strand at 4004.218 kb on + strand at 4004.226 kb on - strand at 4004.233 kb on + strand at 4004.233 kb on + strand at 4004.246 kb on - strand at 4004.293 kb on + strand at 4004.315 kb on + strand at 4004.315 kb on + strand at 4004.327 kb on + strand at 4004.328 kb on - strand at 4004.328 kb on - strand at 4004.335 kb on - strand at 4004.337 kb on + strand at 4004.337 kb on + strand at 4004.364 kb on + strand at 4004.403 kb on - strand at 4004.451 kb on - strand, within CCNA_03839 at 4004.451 kb on - strand, within CCNA_03839 at 4004.482 kb on + strand, within CCNA_03839 at 4004.528 kb on + strand, within CCNA_03839 at 4004.530 kb on - strand, within CCNA_03839 at 4004.554 kb on - strand, within CCNA_03839 at 4004.563 kb on + strand, within CCNA_03839 at 4004.563 kb on + strand, within CCNA_03839 at 4004.573 kb on - strand, within CCNA_03839 at 4004.624 kb on - strand, within CCNA_03839 at 4004.651 kb on + strand, within CCNA_03839 at 4004.659 kb on - strand, within CCNA_03839 at 4004.672 kb on + strand, within CCNA_03839 at 4004.682 kb on + strand, within CCNA_03839 at 4004.682 kb on + strand, within CCNA_03839 at 4004.682 kb on + strand, within CCNA_03839 at 4004.703 kb on + strand, within CCNA_03839 at 4004.709 kb on - strand, within CCNA_03839 at 4004.720 kb on + strand, within CCNA_03839 at 4004.739 kb on + strand, within CCNA_03839 at 4004.776 kb on + strand, within CCNA_03839 at 4004.776 kb on + strand, within CCNA_03839 at 4004.776 kb on + strand, within CCNA_03839 at 4004.784 kb on - strand, within CCNA_03839 at 4004.784 kb on - strand, within CCNA_03839 at 4004.836 kb on - strand, within CCNA_03839 at 4004.849 kb on - strand, within CCNA_03839 at 4004.883 kb on + strand, within CCNA_03839 at 4004.913 kb on + strand, within CCNA_03839 at 4004.937 kb on - strand, within CCNA_03839 at 4004.956 kb on - strand, within CCNA_03839 at 4004.956 kb on - strand, within CCNA_03839 at 4005.042 kb on - strand, within CCNA_03839 at 4005.052 kb on + strand, within CCNA_03839 at 4005.052 kb on + strand, within CCNA_03839 at 4005.057 kb on + strand, within CCNA_03839 at 4005.065 kb on - strand, within CCNA_03839 at 4005.088 kb on + strand, within CCNA_03839 at 4005.097 kb on - strand, within CCNA_03839 at 4005.111 kb on + strand, within CCNA_03839 at 4005.119 kb on - strand, within CCNA_03839 at 4005.134 kb on - strand, within CCNA_03839 at 4005.134 kb on - strand, within CCNA_03839 at 4005.136 kb on + strand, within CCNA_03839 at 4005.136 kb on + strand, within CCNA_03839 at 4005.143 kb on + strand, within CCNA_03839 at 4005.143 kb on + strand, within CCNA_03839 at 4005.144 kb on - strand, within CCNA_03839 at 4005.144 kb on - strand, within CCNA_03839 at 4005.144 kb on - strand, within CCNA_03839
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 4,002,509 + -0.5 4,002,517 - -1.6 4,002,532 - -0.1 4,003,044 + +0.2 4,003,052 - -0.7 4,003,052 - +0.1 4,003,075 + -1.5 4,003,083 - -0.1 4,003,083 - -0.7 4,003,092 + +0.7 4,003,094 - -0.1 4,003,102 + -0.7 4,003,105 - -0.1 4,003,129 - +0.3 4,003,157 + -1.0 4,003,157 + +0.6 4,003,157 + -0.7 4,003,157 + +0.1 4,003,157 + +1.5 4,003,165 - +1.2 4,003,190 - +0.1 4,003,192 + -0.9 4,003,233 + -1.3 4,003,243 - -2.5 4,003,262 - CCNA_03838 0.10 +0.9 4,003,265 + CCNA_03838 0.11 +1.3 4,003,372 + CCNA_03838 0.21 -0.7 4,003,372 + CCNA_03838 0.21 -0.7 4,003,380 - CCNA_03838 0.22 +0.1 4,003,407 + CCNA_03838 0.25 +0.4 4,003,409 - CCNA_03838 0.25 +0.8 4,003,436 - CCNA_03838 0.28 +1.3 4,003,483 + CCNA_03838 0.33 +1.5 4,003,486 - CCNA_03838 0.33 +0.7 4,003,498 - CCNA_03838 0.34 -1.1 4,003,508 + CCNA_03838 0.35 +0.1 4,003,670 + CCNA_03838 0.52 +0.8 4,003,670 + CCNA_03838 0.52 +0.2 4,003,671 - CCNA_03838 0.52 -1.4 4,003,714 + CCNA_03838 0.56 +0.3 4,003,736 + CCNA_03838 0.58 +1.0 4,003,744 - CCNA_03838 0.59 -0.6 4,003,764 - CCNA_03838 0.61 -0.9 4,003,810 + CCNA_03838 0.66 +1.4 4,003,827 - CCNA_03838 0.67 -2.2 4,003,830 - CCNA_03838 0.68 +0.4 4,003,872 + CCNA_03838 0.72 +1.3 4,003,874 + CCNA_03838 0.72 +0.0 4,003,874 + CCNA_03838 0.72 +0.7 4,003,874 + CCNA_03838 0.72 +0.8 4,003,875 - CCNA_03838 0.72 +1.4 4,003,882 - CCNA_03838 0.73 +0.8 4,003,882 - CCNA_03838 0.73 -1.8 4,003,882 - CCNA_03838 0.73 -1.8 4,003,889 + CCNA_03838 0.74 +1.1 4,003,936 - CCNA_03838 0.79 -1.1 4,003,936 - CCNA_03838 0.79 +0.1 4,003,943 + CCNA_03838 0.79 +0.3 4,003,996 + CCNA_03838 0.85 +2.5 4,004,006 + CCNA_03838 0.86 +1.0 4,004,006 + CCNA_03838 0.86 +0.7 4,004,006 + CCNA_03838 0.86 +1.7 4,004,006 + CCNA_03838 0.86 +1.7 4,004,006 + CCNA_03838 0.86 +1.1 4,004,006 + CCNA_03838 0.86 +1.0 4,004,006 + CCNA_03838 0.86 +2.8 4,004,011 + CCNA_03838 0.86 +2.0 4,004,014 - CCNA_03838 0.86 -0.7 4,004,014 - CCNA_03838 0.86 +0.1 4,004,019 + CCNA_03838 0.87 +0.7 4,004,028 + CCNA_03838 0.88 +1.5 4,004,046 + CCNA_03838 0.90 +0.2 4,004,054 - -0.1 4,004,095 + +3.1 4,004,103 - -1.6 4,004,111 - -1.0 4,004,141 + -0.4 4,004,161 - +0.7 4,004,161 - -1.4 4,004,170 - -1.4 4,004,218 + +0.9 4,004,226 - +1.0 4,004,233 + +1.1 4,004,233 + +0.2 4,004,246 - -1.4 4,004,293 + +0.6 4,004,315 + +0.7 4,004,315 + +0.5 4,004,327 + -0.0 4,004,328 - -0.6 4,004,328 - -3.6 4,004,335 - -0.3 4,004,337 + +0.7 4,004,337 + -0.6 4,004,364 + -2.1 4,004,403 - -0.9 4,004,451 - CCNA_03839 0.10 +1.1 4,004,451 - CCNA_03839 0.10 -0.4 4,004,482 + CCNA_03839 0.12 -0.9 4,004,528 + CCNA_03839 0.14 +0.1 4,004,530 - CCNA_03839 0.14 -2.9 4,004,554 - CCNA_03839 0.16 +2.6 4,004,563 + CCNA_03839 0.16 -0.6 4,004,563 + CCNA_03839 0.16 +0.5 4,004,573 - CCNA_03839 0.16 -1.2 4,004,624 - CCNA_03839 0.19 -1.9 4,004,651 + CCNA_03839 0.20 -1.4 4,004,659 - CCNA_03839 0.21 -0.7 4,004,672 + CCNA_03839 0.21 -1.2 4,004,682 + CCNA_03839 0.22 -0.3 4,004,682 + CCNA_03839 0.22 -1.7 4,004,682 + CCNA_03839 0.22 -0.2 4,004,703 + CCNA_03839 0.23 -0.5 4,004,709 - CCNA_03839 0.23 +1.3 4,004,720 + CCNA_03839 0.24 -1.7 4,004,739 + CCNA_03839 0.25 +0.1 4,004,776 + CCNA_03839 0.27 -0.3 4,004,776 + CCNA_03839 0.27 +1.3 4,004,776 + CCNA_03839 0.27 +0.6 4,004,784 - CCNA_03839 0.27 +0.7 4,004,784 - CCNA_03839 0.27 +0.1 4,004,836 - CCNA_03839 0.30 +1.5 4,004,849 - CCNA_03839 0.30 -1.5 4,004,883 + CCNA_03839 0.32 -0.2 4,004,913 + CCNA_03839 0.33 +0.5 4,004,937 - CCNA_03839 0.35 -1.8 4,004,956 - CCNA_03839 0.36 -0.7 4,004,956 - CCNA_03839 0.36 +0.3 4,005,042 - CCNA_03839 0.40 -0.9 4,005,052 + CCNA_03839 0.40 +0.5 4,005,052 + CCNA_03839 0.40 -1.0 4,005,057 + CCNA_03839 0.41 -0.3 4,005,065 - CCNA_03839 0.41 +0.3 4,005,088 + CCNA_03839 0.42 +0.2 4,005,097 - CCNA_03839 0.43 +0.0 4,005,111 + CCNA_03839 0.43 -0.9 4,005,119 - CCNA_03839 0.44 -1.8 4,005,134 - CCNA_03839 0.44 -0.1 4,005,134 - CCNA_03839 0.44 +0.3 4,005,136 + CCNA_03839 0.45 -0.5 4,005,136 + CCNA_03839 0.45 +1.0 4,005,143 + CCNA_03839 0.45 -1.0 4,005,143 + CCNA_03839 0.45 -0.5 4,005,144 - CCNA_03839 0.45 -0.4 4,005,144 - CCNA_03839 0.45 +0.2 4,005,144 - CCNA_03839 0.45 -2.2
Or see this region's nucleotide sequence