Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01784

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01783 and CCNA_01784 are separated by 176 nucleotidesCCNA_01784 and CCNA_01785 overlap by 134 nucleotides CCNA_01783: CCNA_01783 - chromosome replication regulator protein HdaA, at 1,911,358 to 1,912,050 _01783 CCNA_01784: CCNA_01784 - hypothetical protein, at 1,912,227 to 1,912,619 _01784 CCNA_01785: CCNA_01785 - hypothetical protein, at 1,912,486 to 1,913,097 _01785 Position (kb) 1912 1913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1911.239 kb on - strandat 1911.298 kb on + strandat 1911.364 kb on - strandat 1911.379 kb on - strandat 1911.380 kb on - strandat 1912.084 kb on + strandat 1912.094 kb on - strandat 1912.152 kb on - strandat 1912.152 kb on - strandat 1912.165 kb on + strandat 1912.165 kb on + strandat 1912.165 kb on + strandat 1912.173 kb on - strandat 1912.173 kb on - strandat 1912.182 kb on + strandat 1912.182 kb on + strandat 1912.182 kb on + strandat 1912.190 kb on - strandat 1912.190 kb on - strandat 1912.190 kb on - strandat 1912.190 kb on - strandat 1912.307 kb on - strand, within CCNA_01784at 1912.311 kb on - strand, within CCNA_01784at 1912.344 kb on - strand, within CCNA_01784at 1912.380 kb on - strandat 1912.380 kb on - strand, within CCNA_01784at 1912.466 kb on + strand, within CCNA_01784at 1912.471 kb on + strand, within CCNA_01784at 1912.472 kb on - strand, within CCNA_01784at 1912.491 kb on - strandat 1912.597 kb on - strandat 1912.638 kb on - strand, within CCNA_01785at 1912.638 kb on - strand, within CCNA_01785at 1912.652 kb on + strand, within CCNA_01785at 1912.733 kb on - strand, within CCNA_01785at 1912.733 kb on - strand, within CCNA_01785at 1912.736 kb on - strand, within CCNA_01785at 1912.741 kb on - strand, within CCNA_01785at 1912.799 kb on + strand, within CCNA_01785at 1912.834 kb on - strand, within CCNA_01785at 1912.838 kb on + strand, within CCNA_01785at 1912.838 kb on + strand, within CCNA_01785at 1912.847 kb on - strand, within CCNA_01785at 1912.856 kb on + strand, within CCNA_01785at 1912.902 kb on - strand, within CCNA_01785at 1912.941 kb on + strand, within CCNA_01785at 1913.087 kb on - strandat 1913.087 kb on - strandat 1913.087 kb on - strandat 1913.087 kb on - strandat 1913.087 kb on - strandat 1913.087 kb on - strandat 1913.087 kb on - strandat 1913.091 kb on + strandat 1913.163 kb on + strandat 1913.174 kb on - strandat 1913.181 kb on - strandat 1913.206 kb on - strandat 1913.222 kb on + strandat 1913.223 kb on - strandat 1913.230 kb on + strandat 1913.235 kb on + strandat 1913.238 kb on - strandat 1913.238 kb on - strandat 1913.240 kb on + strandat 1913.243 kb on - strandat 1913.243 kb on - strandat 1913.248 kb on - strandat 1913.298 kb on + strandat 1913.298 kb on + strandat 1913.298 kb on + strandat 1913.298 kb on + strandat 1913.306 kb on - strandat 1913.306 kb on - strandat 1913.306 kb on - strandat 1913.308 kb on + strandat 1913.308 kb on + strandat 1913.308 kb on + strandat 1913.308 kb on + strandat 1913.316 kb on - strandat 1913.316 kb on - strandat 1913.318 kb on + strandat 1913.318 kb on + strandat 1913.326 kb on - strandat 1913.326 kb on - strandat 1913.341 kb on + strandat 1913.374 kb on + strandat 1913.374 kb on + strandat 1913.374 kb on + strandat 1913.374 kb on + strandat 1913.374 kb on + strandat 1913.382 kb on - strandat 1913.431 kb on - strandat 1913.434 kb on + strandat 1913.453 kb on + strandat 1913.453 kb on + strandat 1913.456 kb on - strandat 1913.458 kb on + strandat 1913.524 kb on + strandat 1913.524 kb on + strandat 1913.526 kb on - strandat 1913.526 kb on - strandat 1913.532 kb on - strandat 1913.536 kb on + strandat 1913.549 kb on + strandat 1913.549 kb on + strandat 1913.549 kb on + strandat 1913.557 kb on - strandat 1913.559 kb on + strandat 1913.597 kb on - strandat 1913.604 kb on - strandat 1913.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,911,239 - -1.0
1,911,298 + +4.1
1,911,364 - +0.4
1,911,379 - +1.1
1,911,380 - +0.3
1,912,084 + -0.8
1,912,094 - -0.8
1,912,152 - -1.4
1,912,152 - +0.7
1,912,165 + +0.1
1,912,165 + -2.5
1,912,165 + -0.4
1,912,173 - -0.6
1,912,173 - -2.9
1,912,182 + -1.8
1,912,182 + -2.3
1,912,182 + -1.8
1,912,190 - -2.1
1,912,190 - -0.6
1,912,190 - -0.0
1,912,190 - -0.3
1,912,307 - CCNA_01784 0.20 -2.1
1,912,311 - CCNA_01784 0.21 -1.5
1,912,344 - CCNA_01784 0.30 -2.5
1,912,380 - +1.6
1,912,380 - CCNA_01784 0.39 -1.1
1,912,466 + CCNA_01784 0.61 -1.0
1,912,471 + CCNA_01784 0.62 -0.5
1,912,472 - CCNA_01784 0.62 -2.0
1,912,491 - +0.1
1,912,597 - +0.9
1,912,638 - CCNA_01785 0.25 -0.6
1,912,638 - CCNA_01785 0.25 -1.2
1,912,652 + CCNA_01785 0.27 +0.7
1,912,733 - CCNA_01785 0.40 -0.6
1,912,733 - CCNA_01785 0.40 -0.6
1,912,736 - CCNA_01785 0.41 -0.7
1,912,741 - CCNA_01785 0.42 -0.6
1,912,799 + CCNA_01785 0.51 -0.4
1,912,834 - CCNA_01785 0.57 -2.4
1,912,838 + CCNA_01785 0.58 -2.2
1,912,838 + CCNA_01785 0.58 +0.3
1,912,847 - CCNA_01785 0.59 -1.8
1,912,856 + CCNA_01785 0.60 -1.5
1,912,902 - CCNA_01785 0.68 -3.0
1,912,941 + CCNA_01785 0.74 -0.5
1,913,087 - +1.0
1,913,087 - -2.2
1,913,087 - -0.8
1,913,087 - -0.3
1,913,087 - -0.8
1,913,087 - -1.9
1,913,087 - +1.3
1,913,091 + +0.5
1,913,163 + +0.5
1,913,174 - -1.0
1,913,181 - +1.0
1,913,206 - +1.5
1,913,222 + -0.8
1,913,223 - -2.2
1,913,230 + -0.0
1,913,235 + -3.2
1,913,238 - -1.0
1,913,238 - -2.1
1,913,240 + -0.3
1,913,243 - -1.0
1,913,243 - +0.7
1,913,248 - +1.3
1,913,298 + -2.1
1,913,298 + -0.8
1,913,298 + -2.5
1,913,298 + -3.4
1,913,306 - -1.3
1,913,306 - +0.5
1,913,306 - +0.8
1,913,308 + +0.0
1,913,308 + +1.0
1,913,308 + -0.1
1,913,308 + +1.5
1,913,316 - +4.1
1,913,316 - +2.2
1,913,318 + +1.5
1,913,318 + +0.3
1,913,326 - -2.7
1,913,326 - -0.4
1,913,341 + +2.1
1,913,374 + -0.5
1,913,374 + +1.0
1,913,374 + +1.3
1,913,374 + -0.6
1,913,374 + -0.7
1,913,382 - -2.7
1,913,431 - -1.7
1,913,434 + +0.1
1,913,453 + -2.6
1,913,453 + +0.1
1,913,456 - -0.7
1,913,458 + -0.9
1,913,524 + -1.0
1,913,524 + +0.2
1,913,526 - +0.3
1,913,526 - +0.2
1,913,532 - +1.0
1,913,536 + +0.5
1,913,549 + -1.6
1,913,549 + +0.2
1,913,549 + -1.2
1,913,557 - -1.2
1,913,559 + -1.2
1,913,597 - +0.5
1,913,604 - -0.5
1,913,617 + +1.2

Or see this region's nucleotide sequence