Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24745
Experiment: R2A with Paraquat dichloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Paraquat dichloride 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
6,041,852 | + | -1.2 | |||
6,041,874 | + | +0.4 | |||
6,041,874 | + | +0.0 | |||
6,041,894 | + | +0.2 | |||
6,041,944 | + | -0.1 | |||
6,041,950 | + | +0.3 | |||
6,042,697 | + | -0.4 | |||
6,042,768 | - | +0.4 | |||
6,042,777 | + | +1.1 | |||
6,042,779 | + | +0.3 | |||
6,042,780 | - | +0.5 | |||
6,043,397 | - | +0.6 | |||
6,043,404 | + | +1.0 | |||
6,043,447 | - | -0.3 | |||
6,043,490 | - | -0.0 | |||
6,043,491 | + | -0.4 | |||
6,043,491 | + | +0.1 | |||
6,043,492 | - | -1.2 | |||
6,043,492 | - | -0.2 | |||
6,043,509 | - | +0.0 | |||
6,043,509 | - | +1.1 | |||
6,043,519 | - | +0.0 | |||
6,043,657 | - | +0.3 | |||
6,043,657 | - | +0.1 | |||
6,043,703 | + | -0.5 | |||
6,043,704 | - | -1.2 | |||
6,043,737 | - | +0.6 | |||
6,043,740 | - | -0.1 | |||
6,043,759 | - | -0.3 | |||
6,043,812 | - | -0.3 | |||
6,043,812 | - | +0.3 | |||
6,043,918 | - | +0.5 | |||
6,043,922 | + | -0.1 | |||
6,043,961 | + | -0.1 | |||
6,043,996 | + | -0.2 | |||
6,043,996 | + | -0.2 | |||
6,044,001 | + | -0.4 | |||
6,044,002 | - | +0.4 | |||
6,044,049 | + | +0.0 | |||
6,044,049 | + | -0.4 | |||
6,044,137 | - | +0.5 | |||
6,044,155 | - | +0.8 | |||
6,044,159 | - | +1.6 | |||
6,044,239 | + | CA265_RS24750 | 0.13 | -1.4 | |
6,044,357 | - | CA265_RS24750 | 0.31 | -1.6 | |
6,044,370 | + | CA265_RS24750 | 0.33 | -1.0 |
Or see this region's nucleotide sequence