Experiment: R2A with Paraquat dichloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23200 and CA265_RS23205 are separated by 192 nucleotides CA265_RS23205 and CA265_RS23210 overlap by 4 nucleotides CA265_RS23210 and CA265_RS23215 overlap by 4 nucleotides
CA265_RS23200: CA265_RS23200 - hypothetical protein, at 5,675,079 to 5,675,939
_RS23200
CA265_RS23205: CA265_RS23205 - hypothetical protein, at 5,676,132 to 5,676,758
_RS23205
CA265_RS23210: CA265_RS23210 - hypothetical protein, at 5,676,755 to 5,677,945
_RS23210
CA265_RS23215: CA265_RS23215 - hypothetical protein, at 5,677,942 to 5,678,832
_RS23215
Position (kb) 5676
5677
5678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5675.781 kb on + strand, within CA265_RS23200 at 5675.785 kb on - strand, within CA265_RS23200 at 5675.929 kb on + strand at 5675.934 kb on + strand at 5675.962 kb on + strand at 5675.976 kb on - strand at 5675.987 kb on - strand at 5676.108 kb on + strand at 5676.162 kb on - strand at 5676.162 kb on - strand at 5676.167 kb on - strand at 5676.177 kb on - strand at 5676.234 kb on + strand, within CA265_RS23205 at 5676.237 kb on - strand, within CA265_RS23205 at 5676.251 kb on + strand, within CA265_RS23205 at 5676.252 kb on - strand, within CA265_RS23205 at 5676.324 kb on - strand, within CA265_RS23205 at 5676.339 kb on + strand, within CA265_RS23205 at 5676.347 kb on + strand, within CA265_RS23205 at 5676.348 kb on - strand, within CA265_RS23205 at 5676.377 kb on + strand, within CA265_RS23205 at 5676.379 kb on + strand, within CA265_RS23205 at 5676.379 kb on + strand, within CA265_RS23205 at 5676.379 kb on + strand, within CA265_RS23205 at 5676.437 kb on - strand, within CA265_RS23205 at 5676.437 kb on - strand, within CA265_RS23205 at 5676.490 kb on + strand, within CA265_RS23205 at 5676.490 kb on + strand, within CA265_RS23205 at 5676.496 kb on - strand, within CA265_RS23205 at 5676.575 kb on + strand, within CA265_RS23205 at 5676.576 kb on - strand, within CA265_RS23205 at 5676.576 kb on - strand, within CA265_RS23205 at 5676.613 kb on + strand, within CA265_RS23205 at 5676.617 kb on + strand, within CA265_RS23205 at 5676.617 kb on + strand, within CA265_RS23205 at 5676.617 kb on + strand, within CA265_RS23205 at 5676.618 kb on - strand, within CA265_RS23205 at 5676.728 kb on - strand at 5676.728 kb on - strand at 5676.733 kb on + strand at 5676.749 kb on + strand at 5676.749 kb on + strand at 5676.773 kb on - strand at 5676.778 kb on + strand at 5676.779 kb on - strand at 5676.829 kb on - strand at 5676.970 kb on + strand, within CA265_RS23210 at 5677.012 kb on + strand, within CA265_RS23210 at 5677.021 kb on + strand, within CA265_RS23210 at 5677.030 kb on + strand, within CA265_RS23210 at 5677.050 kb on + strand, within CA265_RS23210 at 5677.118 kb on - strand, within CA265_RS23210 at 5677.127 kb on - strand, within CA265_RS23210 at 5677.129 kb on + strand, within CA265_RS23210 at 5677.135 kb on + strand, within CA265_RS23210 at 5677.201 kb on + strand, within CA265_RS23210 at 5677.201 kb on + strand, within CA265_RS23210 at 5677.205 kb on + strand, within CA265_RS23210 at 5677.231 kb on + strand, within CA265_RS23210 at 5677.236 kb on + strand, within CA265_RS23210 at 5677.237 kb on - strand, within CA265_RS23210 at 5677.237 kb on - strand, within CA265_RS23210 at 5677.238 kb on + strand, within CA265_RS23210 at 5677.238 kb on + strand, within CA265_RS23210 at 5677.239 kb on - strand, within CA265_RS23210 at 5677.279 kb on - strand, within CA265_RS23210 at 5677.297 kb on - strand, within CA265_RS23210 at 5677.368 kb on + strand, within CA265_RS23210 at 5677.368 kb on + strand, within CA265_RS23210 at 5677.372 kb on + strand, within CA265_RS23210 at 5677.473 kb on + strand, within CA265_RS23210 at 5677.480 kb on + strand, within CA265_RS23210 at 5677.532 kb on + strand, within CA265_RS23210 at 5677.535 kb on - strand, within CA265_RS23210 at 5677.551 kb on - strand, within CA265_RS23210 at 5677.622 kb on + strand, within CA265_RS23210 at 5677.622 kb on + strand, within CA265_RS23210 at 5677.623 kb on - strand, within CA265_RS23210 at 5677.623 kb on - strand, within CA265_RS23210 at 5677.623 kb on - strand, within CA265_RS23210 at 5677.643 kb on - strand, within CA265_RS23210 at 5677.715 kb on - strand, within CA265_RS23210 at 5677.774 kb on - strand, within CA265_RS23210 at 5677.780 kb on - strand, within CA265_RS23210 at 5677.780 kb on - strand, within CA265_RS23210 at 5677.824 kb on + strand, within CA265_RS23210 at 5677.869 kb on + strand at 5677.869 kb on + strand at 5677.870 kb on - strand at 5677.891 kb on - strand at 5677.898 kb on - strand at 5677.922 kb on - strand at 5677.922 kb on - strand at 5677.950 kb on + strand at 5678.029 kb on - strand at 5678.199 kb on + strand, within CA265_RS23215 at 5678.228 kb on - strand, within CA265_RS23215 at 5678.233 kb on - strand, within CA265_RS23215 at 5678.286 kb on + strand, within CA265_RS23215 at 5678.311 kb on + strand, within CA265_RS23215 at 5678.321 kb on + strand, within CA265_RS23215 at 5678.417 kb on - strand, within CA265_RS23215 at 5678.417 kb on - strand, within CA265_RS23215 at 5678.417 kb on - strand, within CA265_RS23215 at 5678.417 kb on - strand, within CA265_RS23215 at 5678.446 kb on + strand, within CA265_RS23215 at 5678.613 kb on + strand, within CA265_RS23215 at 5678.638 kb on + strand, within CA265_RS23215
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml remove 5,675,781 + CA265_RS23200 0.82 -0.1 5,675,785 - CA265_RS23200 0.82 +0.2 5,675,929 + -0.6 5,675,934 + +0.1 5,675,962 + +0.9 5,675,976 - +0.0 5,675,987 - +0.4 5,676,108 + -0.3 5,676,162 - +0.3 5,676,162 - +0.5 5,676,167 - +0.2 5,676,177 - +0.4 5,676,234 + CA265_RS23205 0.16 -0.7 5,676,237 - CA265_RS23205 0.17 +0.7 5,676,251 + CA265_RS23205 0.19 -0.6 5,676,252 - CA265_RS23205 0.19 -0.2 5,676,324 - CA265_RS23205 0.31 +0.1 5,676,339 + CA265_RS23205 0.33 -0.6 5,676,347 + CA265_RS23205 0.34 -0.2 5,676,348 - CA265_RS23205 0.34 -1.1 5,676,377 + CA265_RS23205 0.39 -0.9 5,676,379 + CA265_RS23205 0.39 -0.3 5,676,379 + CA265_RS23205 0.39 +0.6 5,676,379 + CA265_RS23205 0.39 -0.4 5,676,437 - CA265_RS23205 0.49 +0.2 5,676,437 - CA265_RS23205 0.49 +0.0 5,676,490 + CA265_RS23205 0.57 -0.5 5,676,490 + CA265_RS23205 0.57 +0.1 5,676,496 - CA265_RS23205 0.58 +1.9 5,676,575 + CA265_RS23205 0.71 +0.2 5,676,576 - CA265_RS23205 0.71 +1.0 5,676,576 - CA265_RS23205 0.71 -1.9 5,676,613 + CA265_RS23205 0.77 +0.3 5,676,617 + CA265_RS23205 0.77 +0.2 5,676,617 + CA265_RS23205 0.77 +0.4 5,676,617 + CA265_RS23205 0.77 +0.2 5,676,618 - CA265_RS23205 0.78 +0.2 5,676,728 - +0.3 5,676,728 - +0.9 5,676,733 + -0.5 5,676,749 + -0.1 5,676,749 + -0.9 5,676,773 - +0.5 5,676,778 + +0.2 5,676,779 - +0.7 5,676,829 - -3.5 5,676,970 + CA265_RS23210 0.18 -0.6 5,677,012 + CA265_RS23210 0.22 -2.3 5,677,021 + CA265_RS23210 0.22 -0.8 5,677,030 + CA265_RS23210 0.23 -2.4 5,677,050 + CA265_RS23210 0.25 -1.1 5,677,118 - CA265_RS23210 0.30 -1.4 5,677,127 - CA265_RS23210 0.31 -2.1 5,677,129 + CA265_RS23210 0.31 -0.4 5,677,135 + CA265_RS23210 0.32 -1.6 5,677,201 + CA265_RS23210 0.37 -0.6 5,677,201 + CA265_RS23210 0.37 -2.6 5,677,205 + CA265_RS23210 0.38 -1.0 5,677,231 + CA265_RS23210 0.40 -1.5 5,677,236 + CA265_RS23210 0.40 -0.6 5,677,237 - CA265_RS23210 0.40 -0.9 5,677,237 - CA265_RS23210 0.40 -1.2 5,677,238 + CA265_RS23210 0.41 -0.9 5,677,238 + CA265_RS23210 0.41 -0.4 5,677,239 - CA265_RS23210 0.41 -1.5 5,677,279 - CA265_RS23210 0.44 -2.8 5,677,297 - CA265_RS23210 0.46 -1.9 5,677,368 + CA265_RS23210 0.51 -1.8 5,677,368 + CA265_RS23210 0.51 -0.5 5,677,372 + CA265_RS23210 0.52 -2.4 5,677,473 + CA265_RS23210 0.60 -1.1 5,677,480 + CA265_RS23210 0.61 -1.1 5,677,532 + CA265_RS23210 0.65 -2.2 5,677,535 - CA265_RS23210 0.65 -1.6 5,677,551 - CA265_RS23210 0.67 -1.8 5,677,622 + CA265_RS23210 0.73 -0.4 5,677,622 + CA265_RS23210 0.73 -0.7 5,677,623 - CA265_RS23210 0.73 -1.3 5,677,623 - CA265_RS23210 0.73 -1.9 5,677,623 - CA265_RS23210 0.73 -1.5 5,677,643 - CA265_RS23210 0.75 -0.6 5,677,715 - CA265_RS23210 0.81 -0.5 5,677,774 - CA265_RS23210 0.86 -2.0 5,677,780 - CA265_RS23210 0.86 -1.1 5,677,780 - CA265_RS23210 0.86 -2.3 5,677,824 + CA265_RS23210 0.90 -1.3 5,677,869 + -0.6 5,677,869 + -0.7 5,677,870 - -0.4 5,677,891 - -1.2 5,677,898 - -1.4 5,677,922 - -1.3 5,677,922 - -2.1 5,677,950 + +0.8 5,678,029 - -0.4 5,678,199 + CA265_RS23215 0.29 -0.7 5,678,228 - CA265_RS23215 0.32 +0.5 5,678,233 - CA265_RS23215 0.33 +0.7 5,678,286 + CA265_RS23215 0.39 +1.2 5,678,311 + CA265_RS23215 0.41 +1.2 5,678,321 + CA265_RS23215 0.43 +0.4 5,678,417 - CA265_RS23215 0.53 +0.1 5,678,417 - CA265_RS23215 0.53 -0.3 5,678,417 - CA265_RS23215 0.53 +0.2 5,678,417 - CA265_RS23215 0.53 +0.7 5,678,446 + CA265_RS23215 0.57 +0.1 5,678,613 + CA265_RS23215 0.75 -0.2 5,678,638 + CA265_RS23215 0.78 -0.0
Or see this region's nucleotide sequence