Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19420

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
4,818,235	+				+0.1
4,818,239	+				-0.8
4,818,240	-				+0.1
4,818,314	+		CA265_RS19410	0.18	+0.2
4,818,315	-		CA265_RS19410	0.18	-0.1
4,818,368	+		CA265_RS19410	0.30	-1.2
4,818,443	+		CA265_RS19410	0.46	-0.2
4,818,577	-		CA265_RS19410	0.76	+0.9
4,818,581	-		CA265_RS19410	0.77	-1.7
4,818,606	+		CA265_RS19410	0.83	-0.3
4,818,672	-				+0.6
4,818,696	-				-0.4
4,818,696	-				+0.3
4,818,733	-				+0.2
4,818,737	-				-0.8
4,818,857	+		CA265_RS19415	0.29	-1.2
4,818,857	+		CA265_RS19415	0.29	-1.3
4,818,858	-		CA265_RS19415	0.30	-1.6
4,818,858	-		CA265_RS19415	0.30	-0.4
4,818,858	-		CA265_RS19415	0.30	-0.9
4,818,945	+		CA265_RS19415	0.65	-0.4
4,819,001	-		CA265_RS19415	0.87	-1.0
4,819,043	-				+0.2
4,819,069	-				+0.6
4,819,075	+				-1.6
4,819,087	+				-0.8
4,819,087	+				-2.2
4,819,087	+				-0.5
4,819,087	+				-0.5
4,819,088	-				+0.8
4,819,119	+				-1.2
4,819,119	+				-0.4
4,819,119	+				+0.6
4,819,119	+				+0.0
4,819,273	-		CA265_RS19420	0.56	-0.8
4,819,371	+				-0.5
4,819,405	+				+0.8
4,819,490	+				-0.6
4,819,491	-				+0.1
4,819,492	+				-1.6
4,819,523	-				-0.4
4,819,629	-		CA265_RS19425	0.16	+1.3
4,819,683	+		CA265_RS19425	0.21	-0.3
4,819,684	-		CA265_RS19425	0.21	+0.3
4,819,761	+		CA265_RS19425	0.27	-0.9
4,819,761	+		CA265_RS19425	0.27	+0.1
4,819,803	-		CA265_RS19425	0.30	+0.3
4,819,877	-		CA265_RS19425	0.36	-0.8
4,819,885	+		CA265_RS19425	0.36	-0.3
4,819,930	-		CA265_RS19425	0.40	-0.5
4,819,956	-		CA265_RS19425	0.42	+0.3
4,819,956	-		CA265_RS19425	0.42	+1.0
4,819,962	-		CA265_RS19425	0.42	+0.6
4,820,047	-		CA265_RS19425	0.49	+0.2
4,820,093	-		CA265_RS19425	0.52	+1.5
4,820,105	+		CA265_RS19425	0.53	+0.7
4,820,106	-		CA265_RS19425	0.53	-0.7
4,820,137	+		CA265_RS19425	0.56	+0.4
4,820,138	-		CA265_RS19425	0.56	+0.1
4,820,259	-		CA265_RS19425	0.65	-0.3
4,820,278	-		CA265_RS19425	0.67	+0.4
4,820,354	+		CA265_RS19425	0.73	-0.5