Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18015

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
4,500,565	-		CA265_RS18010	0.14	-0.2
4,500,625	+		CA265_RS18010	0.19	-0.4
4,500,634	-		CA265_RS18010	0.20	-0.0
4,500,634	-		CA265_RS18010	0.20	+0.0
4,500,688	+		CA265_RS18010	0.24	+0.2
4,500,693	+		CA265_RS18010	0.25	-1.3
4,500,693	+		CA265_RS18010	0.25	-0.1
4,500,693	+		CA265_RS18010	0.25	+0.3
4,500,764	-		CA265_RS18010	0.31	-0.2
4,500,802	+		CA265_RS18010	0.34	-0.6
4,500,802	+		CA265_RS18010	0.34	+0.4
4,500,803	-		CA265_RS18010	0.34	+0.2
4,500,815	-		CA265_RS18010	0.36	-0.2
4,500,913	-		CA265_RS18010	0.44	-0.7
4,500,913	-		CA265_RS18010	0.44	+1.8
4,501,037	-		CA265_RS18010	0.55	-0.6
4,501,037	-		CA265_RS18010	0.55	+1.3
4,501,072	-		CA265_RS18010	0.58	-0.3
4,501,089	-		CA265_RS18010	0.59	+0.5
4,501,220	+		CA265_RS18010	0.71	+0.0
4,501,221	-		CA265_RS18010	0.71	+0.4
4,501,264	-		CA265_RS18010	0.75	-0.7
4,501,368	+		CA265_RS18010	0.84	-0.5
4,501,369	-		CA265_RS18010	0.84	+0.0
4,501,465	+				+1.4
4,501,520	-				+1.4
4,501,542	+				-0.4
4,501,552	+				-0.2
4,501,553	-				-0.5
4,501,556	+				-2.4
4,501,651	-				-2.8
4,501,686	+		CA265_RS18015	0.12	-2.9
4,501,687	-		CA265_RS18015	0.12	-0.8
4,501,735	+		CA265_RS18015	0.16	-3.2
4,501,793	+		CA265_RS18015	0.21	-3.2
4,501,793	+		CA265_RS18015	0.21	-4.2
4,501,827	+		CA265_RS18015	0.24	-3.6
4,501,889	+		CA265_RS18015	0.30	-2.3
4,501,890	-		CA265_RS18015	0.30	-2.8
4,501,899	+		CA265_RS18015	0.31	-4.4
4,501,919	+		CA265_RS18015	0.32	-3.1
4,501,920	-		CA265_RS18015	0.32	-5.1
4,501,921	+		CA265_RS18015	0.33	-5.5
4,501,923	+		CA265_RS18015	0.33	-1.8
4,501,923	+		CA265_RS18015	0.33	-2.9
4,501,923	+		CA265_RS18015	0.33	-3.7
4,501,924	-		CA265_RS18015	0.33	-4.7
4,501,967	-		CA265_RS18015	0.37	-2.5
4,501,989	+		CA265_RS18015	0.39	+1.6
4,501,990	-		CA265_RS18015	0.39	-4.5
4,502,085	-		CA265_RS18015	0.47	-4.5
4,502,140	-		CA265_RS18015	0.52	-3.2
4,502,140	-		CA265_RS18015	0.52	-3.4
4,502,285	+		CA265_RS18015	0.65	-3.1
4,502,288	+		CA265_RS18015	0.65	-2.6
4,502,317	-		CA265_RS18015	0.67	-3.1
4,502,402	-		CA265_RS18015	0.75	-4.9
4,502,402	-		CA265_RS18015	0.75	-1.7
4,502,402	-		CA265_RS18015	0.75	-2.8
4,502,447	+		CA265_RS18015	0.79	-2.7
4,502,471	+		CA265_RS18015	0.81	-4.8
4,502,556	-		CA265_RS18015	0.88	-3.2
4,502,640	+				-1.2
4,502,661	-				-2.7
4,502,661	-				-1.6
4,502,711	+				-1.3
4,502,711	+				-3.2
4,502,720	-				-2.0
4,502,720	-				-0.3
4,502,720	-				-1.1
4,502,724	+				+0.6
4,502,735	-				-2.7
4,502,744	-				-2.5
4,502,752	+				-3.3
4,502,752	+				-3.2
4,502,752	+				-1.1
4,502,754	+				-2.2
4,502,754	+				-2.3
4,502,755	-				-1.1
4,502,779	+		CA265_RS18020	0.12	-0.1
4,502,837	-		CA265_RS18020	0.18	-0.9
4,502,902	-		CA265_RS18020	0.24	-2.6
4,502,913	-		CA265_RS18020	0.25	-0.9
4,502,966	-		CA265_RS18020	0.31	-1.7
4,502,988	-		CA265_RS18020	0.33	-1.8
4,502,988	-		CA265_RS18020	0.33	-1.0
4,503,089	-		CA265_RS18020	0.43	-3.9
4,503,108	-		CA265_RS18020	0.45	-1.4
4,503,148	+		CA265_RS18020	0.49	-2.7
4,503,233	-		CA265_RS18020	0.58	-2.1
4,503,235	+		CA265_RS18020	0.58	-3.2
4,503,422	+		CA265_RS18020	0.77	-0.2
4,503,510	+		CA265_RS18020	0.86	-3.7
4,503,666	-				-0.7
4,503,674	+				+1.0
4,503,682	+				+0.6
4,503,682	+				+0.0
4,503,682	+				-0.5