Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16400

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
4,122,590	-				-0.2
4,122,607	-				-0.2
4,122,690	+		CA265_RS16395	0.13	-0.6
4,122,718	+		CA265_RS16395	0.18	+0.4
4,122,748	+		CA265_RS16395	0.23	+0.3
4,122,749	-		CA265_RS16395	0.23	+1.2
4,122,835	-		CA265_RS16395	0.38	-0.4
4,122,903	-		CA265_RS16395	0.50	+0.0
4,122,954	+		CA265_RS16395	0.59	+0.1
4,122,955	-		CA265_RS16395	0.59	+0.2
4,122,959	+		CA265_RS16395	0.60	+0.2
4,122,959	+		CA265_RS16395	0.60	+0.2
4,122,960	-		CA265_RS16395	0.60	-0.6
4,122,960	-		CA265_RS16395	0.60	-0.0
4,123,007	-		CA265_RS16395	0.68	+0.2
4,123,009	-		CA265_RS16395	0.68	+1.1
4,123,009	-		CA265_RS16395	0.68	-0.2
4,123,119	+		CA265_RS16395	0.87	+0.9
4,123,125	-		CA265_RS16395	0.88	+0.3
4,123,133	-		CA265_RS16395	0.90	-2.1
4,123,174	+				+0.5
4,123,174	+				+0.6
4,123,174	+				+0.6
4,123,176	+				+0.4
4,123,177	-				+0.6
4,123,201	+				+0.3
4,123,201	+				+0.5
4,123,201	+				+1.2
4,123,202	-				-0.2
4,123,247	+				+0.8
4,123,248	-				-0.1
4,123,251	+				-0.3
4,123,305	+				+0.7
4,123,316	-				-0.6
4,123,380	+				-0.9
4,123,460	+				-0.3
4,123,778	+				+0.2
4,123,943	+		CA265_RS16400	0.14	-1.8
4,123,965	+		CA265_RS16400	0.15	-1.8
4,124,149	+		CA265_RS16400	0.22	-2.1
4,124,149	+		CA265_RS16400	0.22	-0.8
4,124,162	+		CA265_RS16400	0.22	-1.8
4,124,237	-		CA265_RS16400	0.25	-2.3
4,124,273	+		CA265_RS16400	0.26	-1.4
4,124,343	-		CA265_RS16400	0.29	+0.6
4,124,363	+		CA265_RS16400	0.30	-0.8
4,124,417	-		CA265_RS16400	0.32	-1.5
4,124,943	+		CA265_RS16400	0.51	-1.9
4,125,017	+		CA265_RS16400	0.53	-2.6
4,125,150	-		CA265_RS16400	0.58	-0.2
4,125,155	+		CA265_RS16400	0.58	-0.5
4,125,155	+		CA265_RS16400	0.58	+0.6
4,125,388	+		CA265_RS16400	0.67	-0.2
4,125,470	+		CA265_RS16400	0.70	-1.3
4,125,470	+		CA265_RS16400	0.70	-1.4
4,125,530	+		CA265_RS16400	0.72	-0.6
4,125,542	+		CA265_RS16400	0.72	-1.0
4,125,632	+		CA265_RS16400	0.76	+0.6
4,125,642	+		CA265_RS16400	0.76	-0.1
4,125,706	+		CA265_RS16400	0.78	+0.2
4,125,799	+		CA265_RS16400	0.82	-0.2
4,125,860	-		CA265_RS16400	0.84	+0.6
4,126,045	+				-1.1
4,126,046	-				+0.2
4,126,121	+				-0.0
4,126,214	+				+0.4
4,126,305	+				-1.5
4,126,306	-				-1.5
4,126,306	-				+0.2
4,126,322	+				+0.7
4,126,323	-				-0.3
4,126,384	-				+0.1
4,126,395	-				+0.4
4,126,613	+				-2.1
4,126,639	+				+0.6
4,126,652	-				-0.2
4,126,671	+				-2.4
4,126,772	-		CA265_RS16405	0.12	-1.2
4,126,792	-		CA265_RS16405	0.13	+1.3
4,126,819	-		CA265_RS16405	0.14	+0.6
4,126,819	-		CA265_RS16405	0.14	-0.9
4,126,825	-		CA265_RS16405	0.14	+1.6
4,126,827	-		CA265_RS16405	0.14	+0.2
4,126,919	-		CA265_RS16405	0.18	-0.2
4,126,993	-		CA265_RS16405	0.22	-0.0
4,126,993	-		CA265_RS16405	0.22	-1.2
4,127,052	+		CA265_RS16405	0.24	-1.9
4,127,053	-		CA265_RS16405	0.24	-1.4
4,127,100	+				+3.6
4,127,147	-		CA265_RS16405	0.28	-0.1
4,127,176	-		CA265_RS16405	0.30	+0.1