Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16040

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
4,021,158	-				+0.6
4,021,161	+				+0.7
4,021,174	+				-0.7
4,021,175	-				+0.9
4,021,175	-				+0.3
4,021,253	-		CA265_RS16035	0.10	+0.5
4,021,328	+		CA265_RS16035	0.19	+0.5
4,021,352	+		CA265_RS16035	0.21	-0.2
4,021,405	+		CA265_RS16035	0.27	+0.3
4,021,405	+		CA265_RS16035	0.27	+1.1
4,021,406	-		CA265_RS16035	0.27	-0.2
4,021,413	-		CA265_RS16035	0.28	-2.0
4,021,433	+		CA265_RS16035	0.30	+0.6
4,021,434	-		CA265_RS16035	0.31	-0.1
4,021,444	+		CA265_RS16035	0.32	+1.2
4,021,451	-		CA265_RS16035	0.33	+0.2
4,021,468	+		CA265_RS16035	0.34	+0.1
4,021,493	-		CA265_RS16035	0.37	-0.8
4,021,544	+		CA265_RS16035	0.43	-0.7
4,021,566	+		CA265_RS16035	0.46	+0.5
4,021,566	+		CA265_RS16035	0.46	+0.6
4,021,567	-		CA265_RS16035	0.46	+0.0
4,021,765	+		CA265_RS16035	0.68	-0.5
4,021,765	+		CA265_RS16035	0.68	-0.2
4,021,766	-		CA265_RS16035	0.68	+0.3
4,021,779	+		CA265_RS16035	0.70	+0.1
4,021,823	+		CA265_RS16035	0.75	+0.3
4,021,824	-		CA265_RS16035	0.75	+1.1
4,021,885	+		CA265_RS16035	0.82	-0.7
4,021,889	+		CA265_RS16035	0.82	+1.1
4,021,922	-		CA265_RS16035	0.86	-0.3
4,022,044	-				-0.5
4,022,086	-				-0.5
4,022,117	+				+0.3
4,022,129	-				-1.0
4,022,132	+				-0.0
4,022,137	+				-1.3
4,022,137	+				-0.6
4,022,170	+				-0.6
4,022,174	-				-0.4
4,022,197	+				-0.3
4,022,197	+				-1.7
4,022,297	-		CA265_RS16040	0.15	-0.3
4,022,297	-		CA265_RS16040	0.15	-2.4
4,022,322	+		CA265_RS16040	0.17	-2.0
4,022,357	+		CA265_RS16040	0.20	+1.0
4,022,361	-		CA265_RS16040	0.21	-2.0
4,022,574	+		CA265_RS16040	0.41	-1.0
4,022,577	-		CA265_RS16040	0.41	-1.3
4,022,577	-		CA265_RS16040	0.41	-1.4
4,022,619	+		CA265_RS16040	0.45	-0.4
4,022,619	+		CA265_RS16040	0.45	-0.1
4,022,620	-		CA265_RS16040	0.46	+0.6
4,022,620	-		CA265_RS16040	0.46	-1.4
4,022,620	-		CA265_RS16040	0.46	-0.8
4,022,681	+		CA265_RS16040	0.51	-1.2
4,022,681	+		CA265_RS16040	0.51	-1.4
4,022,682	-		CA265_RS16040	0.51	-1.9
4,022,692	+		CA265_RS16040	0.52	-2.6
4,022,692	+		CA265_RS16040	0.52	-1.6
4,022,692	+		CA265_RS16040	0.52	+1.2
4,022,716	+		CA265_RS16040	0.55	-0.6
4,022,717	-		CA265_RS16040	0.55	-1.2
4,022,755	-		CA265_RS16040	0.58	-2.1
4,022,769	+		CA265_RS16040	0.60	-0.3
4,022,770	-		CA265_RS16040	0.60	-1.2
4,022,842	-		CA265_RS16040	0.67	-0.7
4,022,862	+		CA265_RS16040	0.69	-1.3
4,022,862	+		CA265_RS16040	0.69	-0.7
4,022,863	-		CA265_RS16040	0.69	-2.1
4,022,863	-		CA265_RS16040	0.69	-1.2
4,022,886	-		CA265_RS16040	0.71	-1.4
4,022,924	-		CA265_RS16040	0.74	-2.1
4,022,970	-		CA265_RS16040	0.79	-0.8
4,023,039	-		CA265_RS16040	0.85	-1.4
4,023,043	-		CA265_RS16040	0.86	-0.6
4,023,053	+		CA265_RS16040	0.87	-1.2
4,023,054	-		CA265_RS16040	0.87	-1.4
4,023,159	-				-0.8
4,023,174	+				-1.9
4,023,175	-				-2.1
4,023,205	+				-0.5
4,023,241	+				+0.8
4,023,241	+				-1.9
4,023,246	-				+0.6
4,023,259	+				-0.8
4,023,260	-				-1.4
4,023,268	-				-0.7
4,023,381	+				+1.6
4,023,382	-				-0.2
4,023,382	-				-1.3
4,023,385	+				-0.2
4,023,389	+				-0.6
4,023,389	+				+0.4
4,023,475	+		CA265_RS16045	0.15	-1.6
4,023,511	+		CA265_RS16045	0.21	-0.9
4,023,512	-		CA265_RS16045	0.22	-0.3
4,023,515	+		CA265_RS16045	0.22	+0.3
4,023,617	-		CA265_RS16045	0.41	-1.5
4,023,652	+		CA265_RS16045	0.47	-1.8
4,023,766	+		CA265_RS16045	0.68	-0.6
4,023,766	+		CA265_RS16045	0.68	-1.1
4,023,815	+		CA265_RS16045	0.77	-0.6
4,023,871	-		CA265_RS16045	0.88	+0.8
4,023,956	+				+0.9
4,023,957	-				-0.2
4,023,982	+				-0.0
4,023,997	+				+0.6
4,024,139	+		CA265_RS16050	0.18	+0.4
4,024,140	-		CA265_RS16050	0.19	-0.9
4,024,168	+		CA265_RS16050	0.21	-0.3
4,024,168	+		CA265_RS16050	0.21	+0.5
4,024,169	-		CA265_RS16050	0.21	-0.1