Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14555

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
3,664,503	-				+0.7
3,664,547	-				-0.8
3,664,548	+				-1.1
3,664,557	-				-0.7
3,664,571	+		CA265_RS14550	0.12	-1.2
3,664,595	-				-0.9
3,664,677	+		CA265_RS14550	0.29	-0.4
3,664,682	+		CA265_RS14550	0.30	-1.5
3,664,724	-		CA265_RS14550	0.37	-0.1
3,664,783	+		CA265_RS14550	0.46	-0.3
3,664,783	+		CA265_RS14550	0.46	-0.5
3,664,783	+		CA265_RS14550	0.46	+0.3
3,664,783	+		CA265_RS14550	0.46	+0.2
3,664,784	-		CA265_RS14550	0.46	-1.5
3,664,839	+		CA265_RS14550	0.55	-2.3
3,664,894	+		CA265_RS14550	0.64	-0.8
3,664,894	+		CA265_RS14550	0.64	-1.0
3,664,970	-		CA265_RS14550	0.76	-1.1
3,664,992	-		CA265_RS14550	0.80	-0.7
3,664,992	-		CA265_RS14550	0.80	-0.3
3,665,006	-		CA265_RS14550	0.82	-1.1
3,665,044	-		CA265_RS14550	0.88	-0.3
3,665,063	-				-0.1
3,665,127	+				+0.1
3,665,128	-				-0.5
3,665,183	-				+0.4
3,665,254	-				+0.6
3,665,274	+				+0.4
3,665,297	+				+0.0
3,665,318	+				-0.1
3,665,328	-				+0.4
3,665,368	-				-1.3
3,665,450	+				-2.8
3,665,520	+				-2.5
3,665,609	+				-1.4
3,665,631	+				-3.2
3,665,840	+		CA265_RS14555	0.16	-1.5
3,665,854	+		CA265_RS14555	0.17	-2.4
3,665,860	-		CA265_RS14555	0.17	-2.0
3,665,933	+		CA265_RS14555	0.20	-3.3
3,665,934	-		CA265_RS14555	0.20	-2.2
3,665,973	+		CA265_RS14555	0.22	-2.9
3,666,048	+		CA265_RS14555	0.25	-1.3
3,666,048	+		CA265_RS14555	0.25	-1.6
3,666,049	-		CA265_RS14555	0.25	-1.7
3,666,049	-		CA265_RS14555	0.25	-2.7
3,666,131	+		CA265_RS14555	0.28	-1.3
3,666,183	-		CA265_RS14555	0.30	+0.0
3,666,214	+		CA265_RS14555	0.32	-2.9
3,666,291	-		CA265_RS14555	0.35	-0.9
3,666,357	+		CA265_RS14555	0.37	-3.4
3,666,358	-		CA265_RS14555	0.37	-1.8
3,666,405	-		CA265_RS14555	0.39	-0.9
3,666,405	-		CA265_RS14555	0.39	-1.5
3,666,409	+		CA265_RS14555	0.39	-2.0
3,666,413	+		CA265_RS14555	0.40	-1.7
3,666,414	-		CA265_RS14555	0.40	-1.4
3,666,456	+		CA265_RS14555	0.41	-2.6
3,666,457	-		CA265_RS14555	0.41	-2.0
3,666,539	-		CA265_RS14555	0.45	-2.7
3,666,542	+		CA265_RS14555	0.45	-3.9
3,666,658	+		CA265_RS14555	0.50	-1.6
3,666,659	-		CA265_RS14555	0.50	-2.0
3,666,666	+		CA265_RS14555	0.50	-0.6
3,666,722	-		CA265_RS14555	0.52	-1.1
3,666,861	-		CA265_RS14555	0.58	-3.0
3,666,895	+		CA265_RS14555	0.59	-2.6
3,666,896	-		CA265_RS14555	0.59	-2.5
3,666,953	+		CA265_RS14555	0.61	-3.5
3,666,962	+		CA265_RS14555	0.62	-1.9
3,666,974	+		CA265_RS14555	0.62	-2.4
3,667,010	-		CA265_RS14555	0.64	-1.1
3,667,012	-		CA265_RS14555	0.64	+2.0
3,667,038	+		CA265_RS14555	0.65	-1.1
3,667,079	+		CA265_RS14555	0.67	-2.7
3,667,093	-		CA265_RS14555	0.67	-2.1
3,667,135	+		CA265_RS14555	0.69	-3.2
3,667,137	+		CA265_RS14555	0.69	-0.1
3,667,226	-		CA265_RS14555	0.72	-2.0
3,667,226	-		CA265_RS14555	0.72	-3.8
3,667,284	+		CA265_RS14555	0.75	+1.4
3,667,320	-		CA265_RS14555	0.76	-2.2
3,667,361	+		CA265_RS14555	0.78	-2.7
3,667,380	-		CA265_RS14555	0.79	-3.9
3,667,380	-		CA265_RS14555	0.79	-2.0
3,667,396	-		CA265_RS14555	0.79	-2.2
3,667,447	-		CA265_RS14555	0.81	+1.4
3,667,447	-		CA265_RS14555	0.81	-2.5
3,667,488	+		CA265_RS14555	0.83	-1.6
3,667,490	+		CA265_RS14555	0.83	-2.9
3,667,527	-		CA265_RS14555	0.85	-1.3
3,667,606	-		CA265_RS14555	0.88	-1.8
3,667,606	-		CA265_RS14555	0.88	-1.6
3,667,619	+		CA265_RS14555	0.88	-0.1
3,667,631	+		CA265_RS14555	0.89	-3.0
3,667,651	-		CA265_RS14555	0.90	-0.9
3,667,845	+				-1.1
3,667,852	-				-3.1
3,667,925	-				+0.5
3,667,944	-				-0.1
3,667,948	+				+0.3
3,667,952	+				-0.3
3,667,959	-				-0.9
3,667,959	-				-2.1
3,668,011	+				+0.9
3,668,091	+		CA265_RS14560	0.11	+0.1
3,668,100	-		CA265_RS14560	0.12	-0.0
3,668,105	-		CA265_RS14560	0.12	+0.1
3,668,115	+		CA265_RS14560	0.13	-0.1
3,668,115	+		CA265_RS14560	0.13	-0.7
3,668,115	+		CA265_RS14560	0.13	-0.5
3,668,118	+		CA265_RS14560	0.14	+0.4
3,668,156	+		CA265_RS14560	0.18	+0.6
3,668,223	+		CA265_RS14560	0.25	+0.4
3,668,225	+		CA265_RS14560	0.25	-0.4
3,668,226	-		CA265_RS14560	0.25	-0.4
3,668,304	+		CA265_RS14560	0.33	-1.4
3,668,347	+		CA265_RS14560	0.38	-1.2
3,668,362	+		CA265_RS14560	0.39	-0.1
3,668,405	+		CA265_RS14560	0.44	-0.7
3,668,405	+		CA265_RS14560	0.44	-0.7
3,668,421	+		CA265_RS14560	0.45	-0.8
3,668,443	-		CA265_RS14560	0.48	+0.4
3,668,485	-		CA265_RS14560	0.52	+0.0
3,668,629	-		CA265_RS14560	0.67	-0.9
3,668,668	+		CA265_RS14560	0.71	+0.2
3,668,756	+		CA265_RS14560	0.81	-0.1
3,668,757	-		CA265_RS14560	0.81	-0.6