Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09500

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
2,353,624	+		CA265_RS09495	0.16	-0.7
2,353,625	-		CA265_RS09495	0.16	+0.4
2,353,625	-		CA265_RS09495	0.16	+0.7
2,353,730	+		CA265_RS09495	0.26	-0.2
2,353,761	+		CA265_RS09495	0.29	+0.5
2,353,781	+				+1.7
2,353,807	+		CA265_RS09495	0.34	-0.5
2,353,807	+		CA265_RS09495	0.34	-0.3
2,353,831	-		CA265_RS09495	0.36	-0.2
2,353,851	-		CA265_RS09495	0.38	+1.1
2,353,854	-		CA265_RS09495	0.39	+0.5
2,353,854	-		CA265_RS09495	0.39	-0.9
2,353,884	+		CA265_RS09495	0.42	-1.3
2,353,913	+		CA265_RS09495	0.44	-0.4
2,353,925	+		CA265_RS09495	0.46	-0.5
2,354,044	+		CA265_RS09495	0.57	+0.0
2,354,045	-		CA265_RS09495	0.57	+0.3
2,354,089	-		CA265_RS09495	0.62	-0.1
2,354,089	-		CA265_RS09495	0.62	+0.5
2,354,128	+		CA265_RS09495	0.66	-1.3
2,354,168	+		CA265_RS09495	0.70	-0.2
2,354,169	-		CA265_RS09495	0.70	+0.7
2,354,190	+		CA265_RS09495	0.72	-0.2
2,354,195	+		CA265_RS09495	0.72	-0.7
2,354,239	+		CA265_RS09495	0.76	+0.8
2,354,243	+		CA265_RS09495	0.77	-0.6
2,354,243	+		CA265_RS09495	0.77	+0.2
2,354,243	+		CA265_RS09495	0.77	+0.5
2,354,244	-		CA265_RS09495	0.77	+0.3
2,354,254	+		CA265_RS09495	0.78	-0.8
2,354,255	-		CA265_RS09495	0.78	-0.6
2,354,291	+		CA265_RS09495	0.82	-0.7
2,354,320	-		CA265_RS09495	0.84	+0.9
2,354,418	-				+0.7
2,354,447	-				-0.1
2,354,461	+				+0.0
2,354,462	-				+0.6
2,354,473	-				+1.0
2,354,507	+				+1.0
2,354,508	-				+0.8
2,354,508	-				+1.9
2,354,544	-				+0.5
2,354,582	+				-0.1
2,354,583	-				+1.0
2,354,587	+				+0.1
2,354,589	+				-0.7
2,354,595	+				+0.7
2,354,595	+				-1.8
2,354,640	+				-1.0
2,354,640	+				-0.3
2,354,663	+		CA265_RS09500	0.13	+0.9
2,354,664	-		CA265_RS09500	0.13	-0.0
2,354,664	-		CA265_RS09500	0.13	-0.5
2,354,664	-		CA265_RS09500	0.13	-1.4
2,354,683	+		CA265_RS09500	0.16	-1.2
2,354,690	+		CA265_RS09500	0.17	-1.1
2,354,702	+		CA265_RS09500	0.19	-1.5
2,354,839	+		CA265_RS09500	0.41	-1.7
2,354,870	-		CA265_RS09500	0.46	-0.0
2,354,893	+		CA265_RS09500	0.50	-1.9
2,354,894	-		CA265_RS09500	0.50	-0.2
2,354,937	+		CA265_RS09500	0.57	+0.0
2,354,938	-		CA265_RS09500	0.58	+0.1
2,354,946	+		CA265_RS09500	0.59	-0.7
2,354,946	+		CA265_RS09500	0.59	-1.9
2,354,972	+		CA265_RS09500	0.63	-0.7
2,355,060	-		CA265_RS09500	0.77	-0.3
2,355,135	+		CA265_RS09500	0.90	-2.4
2,355,180	+				-0.7
2,355,181	-				-0.1
2,355,329	-		CA265_RS09505	0.11	-1.3
2,355,355	+		CA265_RS09505	0.14	-0.7
2,355,355	+		CA265_RS09505	0.14	-0.4
2,355,356	-		CA265_RS09505	0.14	-0.3
2,355,453	+		CA265_RS09505	0.25	-0.1
2,355,547	+		CA265_RS09505	0.36	-0.6
2,355,638	+		CA265_RS09505	0.46	-1.1
2,355,763	+		CA265_RS09505	0.60	-0.1
2,355,771	+		CA265_RS09505	0.61	-0.5
2,355,878	-		CA265_RS09505	0.73	-0.1
2,355,884	-		CA265_RS09505	0.74	-1.5
2,355,918	+		CA265_RS09505	0.78	+0.3
2,355,918	+		CA265_RS09505	0.78	+0.2
2,355,921	+		CA265_RS09505	0.78	+0.6
2,355,938	-		CA265_RS09505	0.80	-0.2
2,355,954	+		CA265_RS09505	0.82	-0.0
2,356,049	+				+0.4