Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09480

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
2,350,574	+		CA265_RS09475	0.22	+0.5
2,350,575	-		CA265_RS09475	0.22	-0.1
2,350,777	+		CA265_RS09475	0.42	-0.5
2,350,787	-		CA265_RS09475	0.43	+2.3
2,350,787	-		CA265_RS09475	0.43	-0.8
2,350,829	+		CA265_RS09475	0.47	-0.1
2,350,870	-		CA265_RS09475	0.51	-0.3
2,350,894	+		CA265_RS09475	0.54	-0.3
2,350,900	+		CA265_RS09475	0.54	-0.3
2,350,900	+		CA265_RS09475	0.54	+0.3
2,350,901	-		CA265_RS09475	0.54	+0.3
2,350,902	+		CA265_RS09475	0.55	-0.2
2,350,903	-		CA265_RS09475	0.55	-1.9
2,350,903	-		CA265_RS09475	0.55	+0.5
2,350,903	-		CA265_RS09475	0.55	-0.2
2,350,908	+		CA265_RS09475	0.55	-0.3
2,350,964	-		CA265_RS09475	0.61	-0.1
2,351,067	-		CA265_RS09475	0.71	+1.1
2,351,178	+		CA265_RS09475	0.82	+0.1
2,351,178	+		CA265_RS09475	0.82	-0.7
2,351,179	-		CA265_RS09475	0.82	-0.0
2,351,318	+				-1.5
2,351,319	-				+0.3
2,351,319	-				-1.5
2,351,394	+				-0.0
2,351,399	-				+0.3
2,351,459	+				+0.4
2,351,472	+				-1.5
2,351,473	-				-1.6
2,351,505	+				-1.3
2,351,537	+				-1.0
2,351,538	-				-0.3
2,351,571	+				-0.8
2,351,594	+				-0.5
2,351,595	-				-1.3
2,351,637	-		CA265_RS09480	0.12	-0.5
2,351,728	-		CA265_RS09480	0.19	-0.0
2,351,771	+		CA265_RS09480	0.22	-1.4
2,351,771	+		CA265_RS09480	0.22	-3.1
2,351,795	+		CA265_RS09480	0.24	-0.7
2,351,862	-		CA265_RS09480	0.29	-1.3
2,351,863	+		CA265_RS09480	0.29	-1.7
2,351,864	-		CA265_RS09480	0.29	-1.0
2,351,892	-		CA265_RS09480	0.31	-0.9
2,351,905	+		CA265_RS09480	0.32	-1.1
2,351,906	-		CA265_RS09480	0.32	-0.9
2,352,035	+		CA265_RS09480	0.42	-1.1
2,352,035	+		CA265_RS09480	0.42	+0.1
2,352,045	-		CA265_RS09480	0.43	+1.7
2,352,115	-		CA265_RS09480	0.48	+0.7
2,352,115	-		CA265_RS09480	0.48	-0.5
2,352,125	+		CA265_RS09480	0.49	-1.1
2,352,137	+		CA265_RS09480	0.49	-1.7
2,352,298	+		CA265_RS09480	0.61	-0.5
2,352,299	-		CA265_RS09480	0.61	-1.2
2,352,307	+		CA265_RS09480	0.62	-0.2
2,352,307	+		CA265_RS09480	0.62	-1.2
2,352,427	+		CA265_RS09480	0.71	-0.8
2,352,432	+		CA265_RS09480	0.71	+0.5
2,352,577	-		CA265_RS09480	0.82	-0.6
2,352,577	-		CA265_RS09480	0.82	-1.2
2,352,588	+		CA265_RS09480	0.83	-1.1
2,352,640	-		CA265_RS09480	0.87	-0.9
2,352,665	+		CA265_RS09480	0.89	-1.2
2,352,665	+		CA265_RS09480	0.89	-2.2
2,352,724	+				+1.3
2,352,732	+				-0.6
2,352,733	-				-2.3
2,352,798	-				-1.2
2,352,888	+				+0.6
2,352,891	+				+0.1
2,352,958	+		CA265_RS09485	0.29	-0.6
2,352,958	+		CA265_RS09485	0.29	-0.2
2,352,984	+		CA265_RS09485	0.38	-0.3
2,352,984	+		CA265_RS09485	0.38	-1.4
2,352,984	+		CA265_RS09485	0.38	-0.2
2,352,984	+		CA265_RS09485	0.38	-0.3
2,352,984	+		CA265_RS09485	0.38	+0.5
2,352,986	+		CA265_RS09485	0.39	+0.1
2,353,041	-		CA265_RS09485	0.57	+0.4
2,353,068	-		CA265_RS09485	0.66	+0.7
2,353,070	+		CA265_RS09485	0.67	-1.1
2,353,107	+		CA265_RS09485	0.79	-0.0
2,353,109	+		CA265_RS09485	0.80	-0.3
2,353,110	-		CA265_RS09485	0.80	+1.0
2,353,110	-		CA265_RS09485	0.80	-0.9
2,353,119	+		CA265_RS09485	0.84	+0.0
2,353,150	-				+0.3
2,353,170	+				-0.2
2,353,624	+		CA265_RS09495	0.16	-0.7
2,353,625	-		CA265_RS09495	0.16	+0.4
2,353,625	-		CA265_RS09495	0.16	+0.7
2,353,730	+		CA265_RS09495	0.26	-0.2
2,353,761	+		CA265_RS09495	0.29	+0.5
2,353,781	+				+1.7
2,353,807	+		CA265_RS09495	0.34	-0.5
2,353,807	+		CA265_RS09495	0.34	-0.3