Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04835

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
1,151,804	+		CA265_RS04830	0.43	+1.2
1,151,804	+		CA265_RS04830	0.43	-0.5
1,151,805	-		CA265_RS04830	0.43	+1.0
1,151,809	-		CA265_RS04830	0.44	+0.8
1,151,809	-		CA265_RS04830	0.44	+1.0
1,151,857	-		CA265_RS04830	0.47	+0.2
1,151,866	-		CA265_RS04830	0.47	+0.6
1,151,896	-		CA265_RS04830	0.49	+0.5
1,151,896	-		CA265_RS04830	0.49	+0.8
1,151,907	-		CA265_RS04830	0.50	-0.2
1,151,950	+		CA265_RS04830	0.53	+0.2
1,151,950	+		CA265_RS04830	0.53	+0.2
1,151,951	-		CA265_RS04830	0.53	-0.2
1,151,983	-		CA265_RS04830	0.55	-0.1
1,152,019	+		CA265_RS04830	0.57	-0.2
1,152,020	-		CA265_RS04830	0.57	+0.0
1,152,069	+		CA265_RS04830	0.60	+0.6
1,152,069	+		CA265_RS04830	0.60	-0.4
1,152,070	-		CA265_RS04830	0.60	-0.0
1,152,070	-		CA265_RS04830	0.60	+0.5
1,152,105	+		CA265_RS04830	0.62	+0.1
1,152,277	+		CA265_RS04830	0.73	-0.1
1,152,281	+		CA265_RS04830	0.74	-0.2
1,152,282	-		CA265_RS04830	0.74	-1.3
1,152,303	-		CA265_RS04830	0.75	+0.4
1,152,325	-		CA265_RS04830	0.76	+0.6
1,152,420	+		CA265_RS04830	0.83	+0.3
1,152,459	+		CA265_RS04830	0.85	-0.8
1,152,460	-		CA265_RS04830	0.85	-0.8
1,152,513	+		CA265_RS04830	0.88	+0.4
1,152,582	+				-0.4
1,152,682	+				+0.4
1,152,692	+				-0.3
1,152,696	-				-0.0
1,152,706	-				-0.5
1,152,706	-				-1.7
1,152,735	+				-0.2
1,152,735	+				-0.6
1,152,735	+				-0.4
1,152,750	+				+0.1
1,152,751	-				+0.3
1,152,757	+				-1.5
1,152,758	-				-0.1
1,152,765	-				+0.1
1,152,773	+				+0.5
1,152,794	+				-3.2
1,152,868	+				-3.3
1,153,008	+		CA265_RS04835	0.24	-3.6
1,153,013	+		CA265_RS04835	0.25	-2.1
1,153,033	-		CA265_RS04835	0.27	-1.5
1,153,033	-		CA265_RS04835	0.27	+1.4
1,153,051	-		CA265_RS04835	0.29	+0.2
1,153,086	-		CA265_RS04835	0.32	+0.3
1,153,086	-		CA265_RS04835	0.32	-0.3
1,153,087	+		CA265_RS04835	0.33	-2.9
1,153,087	+		CA265_RS04835	0.33	-3.2
1,153,348	+		CA265_RS04835	0.60	-3.4
1,153,446	-		CA265_RS04835	0.70	-0.2
1,153,447	+		CA265_RS04835	0.71	-4.0
1,153,543	+		CA265_RS04835	0.81	-5.0
1,153,544	-		CA265_RS04835	0.81	-0.1
1,153,590	-		CA265_RS04835	0.86	-0.8
1,153,749	+				+0.9
1,153,756	-				-1.2
1,153,812	-				+1.4
1,153,812	-				-0.7
1,153,831	-				-0.1
1,153,831	-				+0.8
1,153,842	-				+0.2
1,153,842	-				+0.4
1,153,870	+				+0.4
1,153,871	-				+0.6
1,153,871	-				-0.4
1,153,876	-				-0.5
1,153,893	+				+0.5
1,153,943	+		CA265_RS04840	0.13	-0.1
1,154,080	-		CA265_RS04840	0.25	+0.2
1,154,101	-		CA265_RS04840	0.26	+1.4
1,154,134	+		CA265_RS04840	0.29	+0.3
1,154,134	+		CA265_RS04840	0.29	+0.7
1,154,135	-		CA265_RS04840	0.29	-0.2
1,154,152	-		CA265_RS04840	0.31	+0.4
1,154,264	+		CA265_RS04840	0.41	+0.3
1,154,277	-		CA265_RS04840	0.42	+0.6
1,154,315	-		CA265_RS04840	0.45	-1.2
1,154,361	-		CA265_RS04840	0.49	+0.3
1,154,430	+		CA265_RS04840	0.55	+0.2
1,154,430	+		CA265_RS04840	0.55	-0.6
1,154,431	-		CA265_RS04840	0.55	+1.1
1,154,515	+		CA265_RS04840	0.62	+0.1
1,154,529	+		CA265_RS04840	0.63	+0.1
1,154,529	+		CA265_RS04840	0.63	-0.0
1,154,530	-		CA265_RS04840	0.63	+0.6
1,154,530	-		CA265_RS04840	0.63	+0.2
1,154,530	-		CA265_RS04840	0.63	-0.1
1,154,530	-		CA265_RS04840	0.63	-0.1
1,154,533	+		CA265_RS04840	0.64	+0.5
1,154,579	-		CA265_RS04840	0.68	+0.1