Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04400

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
1,054,942	+		CA265_RS04395	0.17	-1.5
1,055,018	+		CA265_RS04395	0.24	-0.7
1,055,023	-		CA265_RS04395	0.25	-0.8
1,055,027	+		CA265_RS04395	0.25	-0.2
1,055,028	+		CA265_RS04395	0.25	-0.9
1,055,028	+		CA265_RS04395	0.25	-0.4
1,055,029	-		CA265_RS04395	0.25	-1.1
1,055,253	-		CA265_RS04395	0.47	-1.0
1,055,253	-		CA265_RS04395	0.47	-0.4
1,055,276	-		CA265_RS04395	0.49	-0.1
1,055,348	+		CA265_RS04395	0.56	-2.6
1,055,349	-		CA265_RS04395	0.56	-0.0
1,055,460	+		CA265_RS04395	0.67	-2.1
1,055,460	+		CA265_RS04395	0.67	+1.1
1,055,461	-		CA265_RS04395	0.67	-0.3
1,055,582	-		CA265_RS04395	0.79	-1.2
1,055,606	+		CA265_RS04395	0.81	-0.8
1,055,645	+		CA265_RS04395	0.85	-1.3
1,055,769	+				-1.4
1,055,848	+				+0.4
1,055,848	+				+1.2
1,055,870	+				+0.7
1,055,903	+				+0.6
1,055,906	+				+0.5
1,055,907	-				+0.1
1,055,909	+				+0.7
1,055,910	-				-0.5
1,055,916	+				+0.1
1,055,919	+				+0.9
1,055,921	+				-0.5
1,055,922	-				-0.8
1,055,968	-				-1.2
1,055,971	+		CA265_RS04400	0.10	-0.9
1,056,052	+		CA265_RS04400	0.24	-1.2
1,056,055	+		CA265_RS04400	0.24	-0.7
1,056,056	-		CA265_RS04400	0.25	-0.6
1,056,126	+		CA265_RS04400	0.36	-0.8
1,056,126	+		CA265_RS04400	0.36	-0.4
1,056,150	+		CA265_RS04400	0.40	-1.8
1,056,163	+		CA265_RS04400	0.42	-2.6
1,056,240	-		CA265_RS04400	0.55	-0.1
1,056,290	-		CA265_RS04400	0.63	+0.7
1,056,336	+		CA265_RS04400	0.71	-0.8
1,056,340	+		CA265_RS04400	0.72	-1.3
1,056,341	-		CA265_RS04400	0.72	-1.1
1,056,341	-		CA265_RS04400	0.72	-1.0
1,056,462	-				-0.1
1,056,468	+				-1.5
1,056,522	-				+0.1
1,056,629	+				+0.1
1,056,698	+				-0.1
1,056,698	+				-0.5
1,056,698	+				-0.3
1,056,709	+				-0.5
1,056,718	-				+0.3
1,056,759	+				-1.3
1,056,780	+				-0.1
1,056,815	+				+0.3
1,056,846	+				+0.0
1,056,846	+				-2.1
1,056,847	-				-0.2
1,056,847	-				+0.9
1,056,847	-				-0.8
1,056,987	+		CA265_RS04405	0.18	+0.2
1,056,993	+		CA265_RS04405	0.18	+0.1
1,057,014	+		CA265_RS04405	0.19	+0.3
1,057,025	+		CA265_RS04405	0.20	-0.6
1,057,025	+		CA265_RS04405	0.20	-0.3
1,057,026	-		CA265_RS04405	0.20	-1.1
1,057,027	+		CA265_RS04405	0.20	+0.0
1,057,131	-		CA265_RS04405	0.26	+0.0
1,057,260	+		CA265_RS04405	0.34	-0.8
1,057,261	-		CA265_RS04405	0.34	-0.5
1,057,287	-		CA265_RS04405	0.36	+0.8
1,057,305	+		CA265_RS04405	0.37	+0.1
1,057,320	+		CA265_RS04405	0.38	+2.0
1,057,336	+		CA265_RS04405	0.39	+0.2
1,057,359	-		CA265_RS04405	0.40	+0.9
1,057,359	-		CA265_RS04405	0.40	+0.2
1,057,359	-		CA265_RS04405	0.40	-0.6
1,057,362	+		CA265_RS04405	0.40	-0.0
1,057,363	-		CA265_RS04405	0.40	-1.8
1,057,415	-		CA265_RS04405	0.43	+1.0