Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03600

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03595 and CA265_RS03600 are separated by 107 nucleotidesCA265_RS03600 and CA265_RS03605 are separated by 82 nucleotidesCA265_RS03605 and CA265_RS03610 are separated by 109 nucleotides CA265_RS03595: CA265_RS03595 - hydrolase, at 860,721 to 861,506 _RS03595 CA265_RS03600: CA265_RS03600 - hypothetical protein, at 861,614 to 862,513 _RS03600 CA265_RS03605: CA265_RS03605 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase, at 862,596 to 863,198 _RS03605 CA265_RS03610: CA265_RS03610 - imidazole glycerol phosphate synthase subunit HisF, at 863,308 to 864,447 _RS03610 Position (kb) 861 862 863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 860.619 kb on + strandat 860.682 kb on - strandat 860.682 kb on - strandat 860.718 kb on + strandat 860.718 kb on + strandat 860.719 kb on - strandat 860.756 kb on - strandat 860.756 kb on - strandat 860.824 kb on + strand, within CA265_RS03595at 860.831 kb on + strand, within CA265_RS03595at 861.080 kb on + strand, within CA265_RS03595at 861.099 kb on + strand, within CA265_RS03595at 861.169 kb on - strand, within CA265_RS03595at 861.200 kb on - strand, within CA265_RS03595at 861.245 kb on + strand, within CA265_RS03595at 861.246 kb on - strand, within CA265_RS03595at 861.371 kb on + strand, within CA265_RS03595at 861.449 kb on + strandat 861.450 kb on - strandat 861.486 kb on - strandat 861.504 kb on + strandat 861.504 kb on + strandat 861.505 kb on - strandat 861.507 kb on + strandat 861.551 kb on - strandat 861.551 kb on - strandat 861.554 kb on - strandat 861.603 kb on + strandat 861.607 kb on - strandat 861.886 kb on - strand, within CA265_RS03600at 861.908 kb on + strand, within CA265_RS03600at 861.939 kb on + strand, within CA265_RS03600at 861.940 kb on - strand, within CA265_RS03600at 861.940 kb on - strand, within CA265_RS03600at 861.970 kb on + strand, within CA265_RS03600at 862.004 kb on + strand, within CA265_RS03600at 862.048 kb on + strand, within CA265_RS03600at 862.049 kb on - strand, within CA265_RS03600at 862.049 kb on - strand, within CA265_RS03600at 862.075 kb on + strand, within CA265_RS03600at 862.107 kb on + strand, within CA265_RS03600at 862.214 kb on + strand, within CA265_RS03600at 862.214 kb on + strand, within CA265_RS03600at 862.297 kb on + strand, within CA265_RS03600at 862.321 kb on + strand, within CA265_RS03600at 862.322 kb on - strand, within CA265_RS03600at 862.334 kb on + strandat 862.335 kb on - strand, within CA265_RS03600at 862.387 kb on + strand, within CA265_RS03600at 862.388 kb on - strand, within CA265_RS03600at 862.391 kb on + strand, within CA265_RS03600at 862.392 kb on - strand, within CA265_RS03600at 862.404 kb on - strand, within CA265_RS03600at 862.546 kb on + strandat 862.546 kb on + strandat 862.576 kb on - strandat 862.622 kb on + strandat 862.626 kb on + strandat 862.637 kb on + strandat 862.641 kb on + strandat 862.805 kb on + strand, within CA265_RS03605at 862.807 kb on + strand, within CA265_RS03605at 862.808 kb on - strand, within CA265_RS03605at 862.808 kb on - strand, within CA265_RS03605at 862.879 kb on + strand, within CA265_RS03605at 863.052 kb on + strand, within CA265_RS03605at 863.053 kb on - strand, within CA265_RS03605at 863.053 kb on - strand, within CA265_RS03605at 863.053 kb on - strand, within CA265_RS03605at 863.110 kb on - strand, within CA265_RS03605at 863.151 kb on + strandat 863.186 kb on + strandat 863.186 kb on + strandat 863.187 kb on - strandat 863.187 kb on - strandat 863.239 kb on + strandat 863.271 kb on + strandat 863.303 kb on - strandat 863.307 kb on - strandat 863.311 kb on + strandat 863.500 kb on - strand, within CA265_RS03610at 863.500 kb on - strand, within CA265_RS03610

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml
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860,619 + +0.3
860,682 - +0.3
860,682 - -1.1
860,718 + -0.8
860,718 + -1.3
860,719 - -0.4
860,756 - -1.7
860,756 - -4.1
860,824 + CA265_RS03595 0.13 -1.4
860,831 + CA265_RS03595 0.14 +0.1
861,080 + CA265_RS03595 0.46 -1.4
861,099 + CA265_RS03595 0.48 -2.2
861,169 - CA265_RS03595 0.57 -1.6
861,200 - CA265_RS03595 0.61 -1.3
861,245 + CA265_RS03595 0.67 +0.1
861,246 - CA265_RS03595 0.67 -0.6
861,371 + CA265_RS03595 0.83 -4.0
861,449 + -0.4
861,450 - +0.4
861,486 - +0.4
861,504 + +0.3
861,504 + +0.4
861,505 - -0.4
861,507 + -0.3
861,551 - +0.1
861,551 - -0.0
861,554 - +1.0
861,603 + +0.2
861,607 - +0.7
861,886 - CA265_RS03600 0.30 -2.5
861,908 + CA265_RS03600 0.33 -2.3
861,939 + CA265_RS03600 0.36 -2.3
861,940 - CA265_RS03600 0.36 -4.4
861,940 - CA265_RS03600 0.36 -3.1
861,970 + CA265_RS03600 0.40 -2.3
862,004 + CA265_RS03600 0.43 -3.7
862,048 + CA265_RS03600 0.48 -1.9
862,049 - CA265_RS03600 0.48 -2.3
862,049 - CA265_RS03600 0.48 -3.7
862,075 + CA265_RS03600 0.51 -2.6
862,107 + CA265_RS03600 0.55 -1.1
862,214 + CA265_RS03600 0.67 -4.3
862,214 + CA265_RS03600 0.67 -0.4
862,297 + CA265_RS03600 0.76 -3.6
862,321 + CA265_RS03600 0.79 -4.1
862,322 - CA265_RS03600 0.79 -2.6
862,334 + -0.6
862,335 - CA265_RS03600 0.80 -3.0
862,387 + CA265_RS03600 0.86 -3.0
862,388 - CA265_RS03600 0.86 -3.3
862,391 + CA265_RS03600 0.86 -3.1
862,392 - CA265_RS03600 0.86 -2.7
862,404 - CA265_RS03600 0.88 -3.3
862,546 + -2.7
862,546 + -3.5
862,576 - +0.2
862,622 + -3.1
862,626 + -2.9
862,637 + -2.3
862,641 + -2.0
862,805 + CA265_RS03605 0.35 -1.7
862,807 + CA265_RS03605 0.35 -3.0
862,808 - CA265_RS03605 0.35 -0.6
862,808 - CA265_RS03605 0.35 +1.2
862,879 + CA265_RS03605 0.47 -1.1
863,052 + CA265_RS03605 0.76 -0.1
863,053 - CA265_RS03605 0.76 +0.3
863,053 - CA265_RS03605 0.76 +0.8
863,053 - CA265_RS03605 0.76 +0.1
863,110 - CA265_RS03605 0.85 +1.8
863,151 + -1.9
863,186 + -4.2
863,186 + -0.8
863,187 - -0.1
863,187 - +0.4
863,239 + -3.8
863,271 + -2.4
863,303 - -0.4
863,307 - -0.3
863,311 + -3.4
863,500 - CA265_RS03610 0.17 +0.7
863,500 - CA265_RS03610 0.17 -0.5

Or see this region's nucleotide sequence