Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03580

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03575 and CA265_RS03580 are separated by 78 nucleotidesCA265_RS03580 and CA265_RS03585 are separated by 78 nucleotidesCA265_RS03585 and CA265_RS03590 are separated by 323 nucleotides CA265_RS03575: CA265_RS03575 - hypothetical protein, at 856,361 to 858,310 _RS03575 CA265_RS03580: CA265_RS03580 - acyl-CoA reductase, at 858,389 to 859,405 _RS03580 CA265_RS03585: CA265_RS03585 - ferredoxin, at 859,484 to 859,834 _RS03585 CA265_RS03590: CA265_RS03590 - universal stress protein, at 860,158 to 860,610 _RS03590 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1at 857.395 kb on + strand, within CA265_RS03575at 857.401 kb on + strand, within CA265_RS03575at 857.402 kb on - strand, within CA265_RS03575at 857.405 kb on + strand, within CA265_RS03575at 857.517 kb on + strand, within CA265_RS03575at 857.572 kb on + strand, within CA265_RS03575at 857.588 kb on - strand, within CA265_RS03575at 857.588 kb on - strand, within CA265_RS03575at 857.645 kb on + strand, within CA265_RS03575at 857.645 kb on + strand, within CA265_RS03575at 857.646 kb on - strand, within CA265_RS03575at 857.680 kb on + strand, within CA265_RS03575at 857.709 kb on - strand, within CA265_RS03575at 857.709 kb on - strand, within CA265_RS03575at 857.751 kb on + strand, within CA265_RS03575at 857.751 kb on + strand, within CA265_RS03575at 857.804 kb on + strand, within CA265_RS03575at 857.880 kb on - strand, within CA265_RS03575at 857.972 kb on + strand, within CA265_RS03575at 858.050 kb on - strand, within CA265_RS03575at 858.050 kb on - strand, within CA265_RS03575at 858.087 kb on - strand, within CA265_RS03575at 858.092 kb on - strand, within CA265_RS03575at 858.101 kb on + strand, within CA265_RS03575at 858.127 kb on + strandat 858.129 kb on + strandat 858.129 kb on + strandat 858.133 kb on + strandat 858.150 kb on + strandat 858.150 kb on + strandat 858.151 kb on - strandat 858.151 kb on - strandat 858.176 kb on - strandat 858.181 kb on + strandat 858.184 kb on + strandat 858.277 kb on + strandat 858.278 kb on - strandat 858.288 kb on - strandat 858.313 kb on - strandat 858.334 kb on - strandat 858.337 kb on - strandat 858.341 kb on - strandat 858.367 kb on + strandat 858.388 kb on - strandat 858.418 kb on + strandat 858.419 kb on - strandat 858.422 kb on + strandat 858.503 kb on + strand, within CA265_RS03580at 858.682 kb on - strand, within CA265_RS03580at 858.692 kb on - strand, within CA265_RS03580at 858.694 kb on + strand, within CA265_RS03580at 858.694 kb on + strand, within CA265_RS03580at 858.703 kb on + strand, within CA265_RS03580at 858.715 kb on + strand, within CA265_RS03580at 858.757 kb on + strand, within CA265_RS03580at 858.757 kb on + strand, within CA265_RS03580at 858.757 kb on + strand, within CA265_RS03580at 858.758 kb on - strand, within CA265_RS03580at 858.870 kb on - strand, within CA265_RS03580at 858.870 kb on - strand, within CA265_RS03580at 859.116 kb on - strand, within CA265_RS03580at 859.121 kb on + strand, within CA265_RS03580at 859.236 kb on - strand, within CA265_RS03580at 859.236 kb on - strand, within CA265_RS03580at 859.328 kb on + strandat 859.841 kb on - strandat 859.964 kb on - strandat 859.964 kb on - strandat 859.990 kb on + strandat 859.990 kb on + strandat 860.023 kb on + strandat 860.024 kb on - strandat 860.083 kb on + strandat 860.136 kb on + strandat 860.137 kb on - strandat 860.159 kb on + strandat 860.209 kb on - strand, within CA265_RS03590at 860.209 kb on - strand, within CA265_RS03590at 860.316 kb on + strand, within CA265_RS03590at 860.344 kb on - strand, within CA265_RS03590at 860.347 kb on + strand, within CA265_RS03590at 860.348 kb on - strand, within CA265_RS03590at 860.348 kb on - strand, within CA265_RS03590at 860.351 kb on + strand, within CA265_RS03590at 860.371 kb on - strand, within CA265_RS03590at 860.403 kb on + strand, within CA265_RS03590

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml
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857,395 + CA265_RS03575 0.53 -0.3
857,401 + CA265_RS03575 0.53 +0.1
857,402 - CA265_RS03575 0.53 +0.9
857,405 + CA265_RS03575 0.54 +1.4
857,517 + CA265_RS03575 0.59 +0.9
857,572 + CA265_RS03575 0.62 +0.2
857,588 - CA265_RS03575 0.63 +0.2
857,588 - CA265_RS03575 0.63 +0.3
857,645 + CA265_RS03575 0.66 -0.0
857,645 + CA265_RS03575 0.66 -0.2
857,646 - CA265_RS03575 0.66 +1.0
857,680 + CA265_RS03575 0.68 +1.4
857,709 - CA265_RS03575 0.69 -0.1
857,709 - CA265_RS03575 0.69 -2.0
857,751 + CA265_RS03575 0.71 -0.6
857,751 + CA265_RS03575 0.71 -0.9
857,804 + CA265_RS03575 0.74 -0.3
857,880 - CA265_RS03575 0.78 -0.7
857,972 + CA265_RS03575 0.83 -1.4
858,050 - CA265_RS03575 0.87 +0.0
858,050 - CA265_RS03575 0.87 -0.7
858,087 - CA265_RS03575 0.89 +0.3
858,092 - CA265_RS03575 0.89 -0.6
858,101 + CA265_RS03575 0.89 -0.9
858,127 + +0.7
858,129 + -0.6
858,129 + -1.6
858,133 + +1.4
858,150 + -0.1
858,150 + -0.6
858,151 - +0.4
858,151 - +0.9
858,176 - +0.1
858,181 + -2.6
858,184 + +0.3
858,277 + -0.2
858,278 - -0.0
858,288 - -0.8
858,313 - +0.1
858,334 - -0.2
858,337 - +0.1
858,341 - +0.3
858,367 + -0.8
858,388 - +1.1
858,418 + -1.1
858,419 - -0.9
858,422 + -1.1
858,503 + CA265_RS03580 0.11 -1.3
858,682 - CA265_RS03580 0.29 -1.1
858,692 - CA265_RS03580 0.30 -0.6
858,694 + CA265_RS03580 0.30 -1.1
858,694 + CA265_RS03580 0.30 -0.4
858,703 + CA265_RS03580 0.31 -0.6
858,715 + CA265_RS03580 0.32 -0.9
858,757 + CA265_RS03580 0.36 -0.7
858,757 + CA265_RS03580 0.36 +0.1
858,757 + CA265_RS03580 0.36 -1.1
858,758 - CA265_RS03580 0.36 -0.4
858,870 - CA265_RS03580 0.47 -1.5
858,870 - CA265_RS03580 0.47 -1.6
859,116 - CA265_RS03580 0.71 -1.0
859,121 + CA265_RS03580 0.72 +0.4
859,236 - CA265_RS03580 0.83 -0.4
859,236 - CA265_RS03580 0.83 -0.9
859,328 + -0.9
859,841 - -1.6
859,964 - -0.2
859,964 - -0.0
859,990 + -0.4
859,990 + -0.6
860,023 + -0.1
860,024 - -0.7
860,083 + -1.2
860,136 + -0.5
860,137 - +0.1
860,159 + -1.0
860,209 - CA265_RS03590 0.11 -0.5
860,209 - CA265_RS03590 0.11 -0.4
860,316 + CA265_RS03590 0.35 -0.9
860,344 - CA265_RS03590 0.41 -0.7
860,347 + CA265_RS03590 0.42 -0.2
860,348 - CA265_RS03590 0.42 -0.5
860,348 - CA265_RS03590 0.42 -0.9
860,351 + CA265_RS03590 0.43 -0.3
860,371 - CA265_RS03590 0.47 -1.1
860,403 + CA265_RS03590 0.54 +0.0

Or see this region's nucleotide sequence