Experiment: R2A with Paraquat dichloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00980 and CA265_RS00985 are separated by 270 nucleotides CA265_RS00985 and CA265_RS00990 are separated by 141 nucleotides CA265_RS00990 and CA265_RS00995 are separated by 579 nucleotides
CA265_RS00980: CA265_RS00980 - hypothetical protein, at 249,489 to 250,655
_RS00980
CA265_RS00985: CA265_RS00985 - phosphoheptose isomerase, at 250,926 to 251,423
_RS00985
CA265_RS00990: CA265_RS00990 - acyl-CoA desaturase, at 251,565 to 252,293
_RS00990
CA265_RS00995: CA265_RS00995 - hypothetical protein, at 252,873 to 253,202
_RS00995
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 250.580 kb on + strand at 250.581 kb on - strand at 250.592 kb on + strand at 250.593 kb on - strand at 250.593 kb on - strand at 250.593 kb on - strand at 250.670 kb on + strand at 250.687 kb on - strand at 250.690 kb on - strand at 250.716 kb on + strand at 250.757 kb on + strand at 250.758 kb on - strand at 250.760 kb on - strand at 250.825 kb on - strand at 250.838 kb on + strand at 251.453 kb on + strand at 251.481 kb on + strand at 251.500 kb on - strand at 251.547 kb on - strand at 251.548 kb on + strand at 251.549 kb on - strand at 251.553 kb on + strand at 251.554 kb on - strand at 251.554 kb on - strand at 251.554 kb on - strand at 251.603 kb on - strand at 251.638 kb on - strand, within CA265_RS00990 at 251.725 kb on + strand, within CA265_RS00990 at 251.739 kb on + strand, within CA265_RS00990 at 251.846 kb on + strand, within CA265_RS00990 at 251.846 kb on + strand, within CA265_RS00990 at 251.850 kb on + strand, within CA265_RS00990 at 251.850 kb on + strand, within CA265_RS00990 at 251.850 kb on + strand, within CA265_RS00990 at 251.850 kb on + strand, within CA265_RS00990 at 251.850 kb on + strand, within CA265_RS00990 at 251.851 kb on - strand, within CA265_RS00990 at 251.851 kb on - strand, within CA265_RS00990 at 251.870 kb on + strand, within CA265_RS00990 at 251.875 kb on + strand, within CA265_RS00990 at 251.975 kb on + strand, within CA265_RS00990 at 252.003 kb on + strand, within CA265_RS00990 at 252.004 kb on - strand, within CA265_RS00990 at 252.015 kb on + strand, within CA265_RS00990 at 252.030 kb on - strand, within CA265_RS00990 at 252.087 kb on + strand, within CA265_RS00990 at 252.088 kb on - strand, within CA265_RS00990 at 252.120 kb on - strand, within CA265_RS00990 at 252.254 kb on - strand at 252.272 kb on + strand at 252.276 kb on - strand at 252.311 kb on - strand at 252.311 kb on - strand at 252.364 kb on + strand at 252.364 kb on + strand at 252.365 kb on - strand at 252.366 kb on + strand at 252.463 kb on + strand at 252.505 kb on - strand at 252.644 kb on + strand at 252.655 kb on + strand at 252.692 kb on + strand at 252.755 kb on - strand at 252.834 kb on + strand at 252.836 kb on - strand at 252.926 kb on + strand, within CA265_RS00995 at 252.931 kb on + strand, within CA265_RS00995 at 253.021 kb on - strand, within CA265_RS00995 at 253.025 kb on + strand, within CA265_RS00995 at 253.025 kb on + strand, within CA265_RS00995 at 253.073 kb on + strand, within CA265_RS00995 at 253.088 kb on + strand, within CA265_RS00995 at 253.115 kb on + strand, within CA265_RS00995 at 253.120 kb on + strand, within CA265_RS00995 at 253.121 kb on - strand, within CA265_RS00995 at 253.134 kb on + strand, within CA265_RS00995 at 253.160 kb on - strand, within CA265_RS00995 at 253.186 kb on + strand at 253.201 kb on - strand at 253.242 kb on + strand at 253.245 kb on + strand at 253.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml remove 250,580 + +0.5 250,581 - -0.2 250,592 + +0.2 250,593 - -0.5 250,593 - +0.2 250,593 - +0.1 250,670 + +0.8 250,687 - +0.5 250,690 - -0.2 250,716 + +1.4 250,757 + +0.8 250,758 - +0.5 250,760 - -0.4 250,825 - -0.1 250,838 + +0.7 251,453 + +0.6 251,481 + +1.5 251,500 - +0.4 251,547 - -1.1 251,548 + -0.5 251,549 - -0.9 251,553 + -0.4 251,554 - -0.6 251,554 - -0.5 251,554 - -2.8 251,603 - -0.5 251,638 - CA265_RS00990 0.10 -1.6 251,725 + CA265_RS00990 0.22 -2.4 251,739 + CA265_RS00990 0.24 -2.3 251,846 + CA265_RS00990 0.39 -2.0 251,846 + CA265_RS00990 0.39 -1.0 251,850 + CA265_RS00990 0.39 +0.5 251,850 + CA265_RS00990 0.39 -0.1 251,850 + CA265_RS00990 0.39 -1.5 251,850 + CA265_RS00990 0.39 -1.7 251,850 + CA265_RS00990 0.39 -1.9 251,851 - CA265_RS00990 0.39 -1.6 251,851 - CA265_RS00990 0.39 +0.2 251,870 + CA265_RS00990 0.42 +0.5 251,875 + CA265_RS00990 0.43 +1.5 251,975 + CA265_RS00990 0.56 -0.3 252,003 + CA265_RS00990 0.60 -1.1 252,004 - CA265_RS00990 0.60 -1.5 252,015 + CA265_RS00990 0.62 -1.7 252,030 - CA265_RS00990 0.64 -1.5 252,087 + CA265_RS00990 0.72 -2.7 252,088 - CA265_RS00990 0.72 -2.5 252,120 - CA265_RS00990 0.76 -0.9 252,254 - +0.0 252,272 + -1.0 252,276 - -1.1 252,311 - -0.4 252,311 - -0.8 252,364 + +1.5 252,364 + -0.5 252,365 - -1.1 252,366 + +0.2 252,463 + -0.2 252,505 - -0.2 252,644 + +0.1 252,655 + +0.1 252,692 + +0.5 252,755 - -1.2 252,834 + -0.2 252,836 - -1.1 252,926 + CA265_RS00995 0.16 -0.6 252,931 + CA265_RS00995 0.18 +0.1 253,021 - CA265_RS00995 0.45 -0.5 253,025 + CA265_RS00995 0.46 -0.2 253,025 + CA265_RS00995 0.46 +0.2 253,073 + CA265_RS00995 0.61 +0.9 253,088 + CA265_RS00995 0.65 +1.5 253,115 + CA265_RS00995 0.73 +0.4 253,120 + CA265_RS00995 0.75 +0.1 253,121 - CA265_RS00995 0.75 -0.4 253,134 + CA265_RS00995 0.79 +0.4 253,160 - CA265_RS00995 0.87 -0.9 253,186 + +0.7 253,201 - -0.6 253,242 + +0.8 253,245 + +0.5 253,274 - -0.7
Or see this region's nucleotide sequence