Experiment: R2A with Paraquat dichloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00205 and CA265_RS00210 are separated by 640 nucleotides CA265_RS00210 and CA265_RS00215 are separated by 39 nucleotides
CA265_RS00205: CA265_RS00205 - acetylornithine deacetylase, at 49,906 to 51,006
_RS00205
CA265_RS00210: CA265_RS00210 - potassium-transporting ATPase subunit F, at 51,647 to 51,724
_RS00210
CA265_RS00215: CA265_RS00215 - potassium-transporting ATPase subunit KdpA, at 51,764 to 53,476
_RS00215
Position (kb) 51
52 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.698 kb on + strand, within CA265_RS00205 at 50.718 kb on - strand, within CA265_RS00205 at 50.722 kb on - strand, within CA265_RS00205 at 50.731 kb on - strand, within CA265_RS00205 at 50.737 kb on - strand, within CA265_RS00205 at 50.752 kb on - strand, within CA265_RS00205 at 50.791 kb on - strand, within CA265_RS00205 at 50.795 kb on + strand, within CA265_RS00205 at 50.795 kb on + strand, within CA265_RS00205 at 50.796 kb on - strand, within CA265_RS00205 at 50.826 kb on - strand, within CA265_RS00205 at 50.886 kb on - strand, within CA265_RS00205 at 50.904 kb on + strand at 50.923 kb on - strand at 50.974 kb on + strand at 50.975 kb on - strand at 50.979 kb on + strand at 51.026 kb on + strand at 51.034 kb on + strand at 51.041 kb on - strand at 51.181 kb on - strand at 51.205 kb on - strand at 51.259 kb on + strand at 51.260 kb on - strand at 51.307 kb on + strand at 51.464 kb on + strand at 51.545 kb on - strand at 51.569 kb on + strand at 51.569 kb on + strand at 51.610 kb on + strand at 51.682 kb on + strand, within CA265_RS00210 at 51.683 kb on - strand, within CA265_RS00210 at 51.688 kb on + strand, within CA265_RS00210 at 51.971 kb on - strand, within CA265_RS00215 at 51.981 kb on + strand, within CA265_RS00215 at 51.981 kb on + strand, within CA265_RS00215 at 51.982 kb on - strand, within CA265_RS00215 at 51.982 kb on - strand, within CA265_RS00215 at 51.982 kb on - strand, within CA265_RS00215 at 51.985 kb on - strand, within CA265_RS00215 at 52.008 kb on + strand, within CA265_RS00215 at 52.009 kb on - strand, within CA265_RS00215 at 52.146 kb on - strand, within CA265_RS00215 at 52.146 kb on - strand, within CA265_RS00215 at 52.160 kb on + strand, within CA265_RS00215 at 52.161 kb on - strand, within CA265_RS00215 at 52.164 kb on + strand, within CA265_RS00215 at 52.241 kb on - strand, within CA265_RS00215 at 52.300 kb on - strand, within CA265_RS00215 at 52.320 kb on + strand, within CA265_RS00215 at 52.320 kb on + strand, within CA265_RS00215 at 52.362 kb on - strand, within CA265_RS00215 at 52.473 kb on - strand, within CA265_RS00215 at 52.473 kb on - strand, within CA265_RS00215 at 52.627 kb on - strand, within CA265_RS00215 at 52.666 kb on - strand, within CA265_RS00215 at 52.708 kb on + strand, within CA265_RS00215 at 52.709 kb on - strand, within CA265_RS00215
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml remove 50,698 + CA265_RS00205 0.72 +2.5 50,718 - CA265_RS00205 0.74 -0.5 50,722 - CA265_RS00205 0.74 -0.2 50,731 - CA265_RS00205 0.75 -0.4 50,737 - CA265_RS00205 0.75 -0.0 50,752 - CA265_RS00205 0.77 +0.2 50,791 - CA265_RS00205 0.80 -0.1 50,795 + CA265_RS00205 0.81 -0.2 50,795 + CA265_RS00205 0.81 -1.3 50,796 - CA265_RS00205 0.81 -0.7 50,826 - CA265_RS00205 0.84 -0.0 50,886 - CA265_RS00205 0.89 +0.5 50,904 + +0.9 50,923 - +0.1 50,974 + +0.9 50,975 - +0.2 50,979 + +1.5 51,026 + +1.5 51,034 + -0.4 51,041 - -0.9 51,181 - +0.4 51,205 - -0.2 51,259 + +1.1 51,260 - -0.5 51,307 + -0.7 51,464 + +0.1 51,545 - -0.4 51,569 + -1.8 51,569 + -1.0 51,610 + -1.2 51,682 + CA265_RS00210 0.45 -2.1 51,683 - CA265_RS00210 0.46 +0.1 51,688 + CA265_RS00210 0.53 -2.1 51,971 - CA265_RS00215 0.12 +0.1 51,981 + CA265_RS00215 0.13 -0.7 51,981 + CA265_RS00215 0.13 -0.4 51,982 - CA265_RS00215 0.13 +0.4 51,982 - CA265_RS00215 0.13 -0.6 51,982 - CA265_RS00215 0.13 +0.5 51,985 - CA265_RS00215 0.13 +0.2 52,008 + CA265_RS00215 0.14 -0.4 52,009 - CA265_RS00215 0.14 -0.6 52,146 - CA265_RS00215 0.22 +0.7 52,146 - CA265_RS00215 0.22 +0.2 52,160 + CA265_RS00215 0.23 -1.3 52,161 - CA265_RS00215 0.23 -0.2 52,164 + CA265_RS00215 0.23 -0.4 52,241 - CA265_RS00215 0.28 +1.3 52,300 - CA265_RS00215 0.31 -0.3 52,320 + CA265_RS00215 0.32 -0.1 52,320 + CA265_RS00215 0.32 +0.2 52,362 - CA265_RS00215 0.35 -0.0 52,473 - CA265_RS00215 0.41 -1.2 52,473 - CA265_RS00215 0.41 -0.2 52,627 - CA265_RS00215 0.50 -1.2 52,666 - CA265_RS00215 0.53 -0.4 52,708 + CA265_RS00215 0.55 -1.1 52,709 - CA265_RS00215 0.55 -0.3
Or see this region's nucleotide sequence