Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00030

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
3,008	+		CA265_RS00020	0.49	-1.2
3,009	-		CA265_RS00020	0.49	-0.8
3,041	+		CA265_RS00020	0.53	-0.2
3,042	-		CA265_RS00020	0.53	-1.1
3,117	-		CA265_RS00020	0.63	-0.3
3,175	+		CA265_RS00020	0.71	-0.3
3,185	+		CA265_RS00020	0.72	-0.8
3,185	+		CA265_RS00020	0.72	-0.4
3,260	+		CA265_RS00020	0.82	-0.0
3,260	+		CA265_RS00020	0.82	+1.8
3,291	+		CA265_RS00020	0.86	-0.4
3,294	+		CA265_RS00020	0.86	-0.3
3,294	+		CA265_RS00020	0.86	-0.4
3,299	+		CA265_RS00020	0.87	-0.8
3,364	-				-1.4
3,406	+				+0.7
3,407	-				-0.5
3,417	+				-1.3
3,418	-				-0.3
3,418	-				+0.0
3,572	+		CA265_RS00025	0.38	+1.5
3,572	+		CA265_RS00025	0.38	-0.7
3,597	+		CA265_RS00025	0.43	+0.5
3,758	+		CA265_RS00025	0.80	-0.1
3,759	-		CA265_RS00025	0.80	-1.7
3,767	+		CA265_RS00025	0.82	+1.3
3,848	+				-1.7
3,848	+				-0.8
3,848	+				-0.9
3,849	-				-1.8
3,854	+				+1.3
3,854	+				+0.5
3,857	+				-0.1
3,858	-				-3.7
3,858	-				-1.5
3,861	+				-0.3
3,880	+				-0.3
3,881	-				+0.1
3,891	+				+0.4
3,892	-				+1.5
3,912	-				+0.3
3,913	+				-0.4
3,914	-				-0.2
3,914	-				+0.1
3,914	-				-0.0
3,914	-				+0.5
3,987	+				-0.9
3,988	-				-2.9
4,111	+		CA265_RS00030	0.31	-0.9
4,150	+		CA265_RS00030	0.38	-1.3
4,180	+		CA265_RS00030	0.43	+0.5
4,306	+		CA265_RS00030	0.64	-1.7
4,340	-		CA265_RS00030	0.70	-0.8
4,440	+		CA265_RS00030	0.87	-0.8
4,441	-		CA265_RS00030	0.88	-0.5
4,476	+				-0.7
4,477	-				-0.8
4,477	-				+0.5
4,502	-				-1.1
4,547	+				-0.1
4,566	-				+0.2
4,769	+				+0.2
4,770	-				+0.1
4,772	+				-0.1
4,834	-				+0.3
4,926	-				-0.7
4,944	-				+1.1
4,959	+				-1.0
4,959	+				-0.5
4,968	-				-0.1
4,979	+				+0.1
5,204	+		CA265_RS00035	0.13	+2.1
5,206	+		CA265_RS00035	0.14	+0.4
5,214	+		CA265_RS00035	0.14	-0.0
5,214	+		CA265_RS00035	0.14	+0.5
5,247	-		CA265_RS00035	0.16	+0.0
5,253	-		CA265_RS00035	0.17	+0.4
5,300	-		CA265_RS00035	0.20	-0.6
5,342	+		CA265_RS00035	0.22	+0.8
5,342	+		CA265_RS00035	0.22	+0.3
5,408	-		CA265_RS00035	0.27	+0.7
5,484	+		CA265_RS00035	0.32	+0.9